SMTL ID : 4a0t.1

Structure of the carboxy-terminal domain of bacteriophage T7 fibre gp17 containing residues 371-553.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x TMO: trimethylamine oxide(Non-covalent)

TMO.1: 4 residues within 4Å: Chain A: Y.60, Y.72, G.76, Y.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.76 pi-Cation interactions: A:Y.72 TMO.2: 4 residues within 4Å: Chain B: Y.60, Y.72, G.76, Y.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.88 pi-Cation interactions: B:Y.72 TMO.4: 4 residues within 4Å: Chain C: Y.60, Y.72, G.76, Y.88 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.88, C:Y.88 pi-Cation interactions: C:Y.60, C:Y.72

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: V.139, N.169, R.183 Chain B: V.139, N.169, R.183 Chain C: V.139, N.169, R.183 12 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:N.169, B:N.169, A:N.169, A:R.183, C:N.169 Water bridges: B:R.183, A:R.183, A:E.226, A:E.226, A:E.226, A:E.226, C:E.226

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 5 residues within 4Å: Chain C: G.156, S.158, Q.202, H.204, K.211 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.211 Water bridges: C:Q.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Doval, C. et al., Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers. Proc. Natl. Acad. Sci. U.S.A. (2012)

Release Date

2012-05-30

Peptides

TAIL FIBER PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

TAIL FIBER PROTEIN