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SMTL ID : 4a1z.1
Eg5-1
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
homo-dimer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
3 residues within 4Å:
Chain A:
T.112
,
D.265
Ligands:
ADP.4
5
PLIP interactions
:
1 interactions with chain A
,
4 Ligand-Water interactions
Metal complexes:
A:T.112
,
H
2
O.2
,
H
2
O.2
,
H
2
O.2
,
H
2
O.4
MG.5:
2 residues within 4Å:
Chain B:
T.112
Ligands:
ADP.6
4
PLIP interactions
:
1 interactions with chain B
,
3 Ligand-Water interactions
Metal complexes:
B:T.112
,
H
2
O.5
,
H
2
O.5
,
H
2
O.7
2 x
NO3
:
NITRATE ION
(Non-functional Binders)
NO3.2:
6 residues within 4Å:
Chain A:
A.37
,
S.340
,
L.341
Chain B:
Y.231
,
S.233
,
R.234
4
PLIP interactions
:
2 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:R.234
,
A:S.340
Water bridges:
B:S.233
,
A:S.36
NO3.3:
6 residues within 4Å:
Chain A:
E.166
,
H.236
,
N.287
,
S.291
,
K.315
,
L.316
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:E.166
,
A:N.287
,
A:S.291
,
A:K.315
,
A:L.316
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.4:
14 residues within 4Å:
Chain A:
R.24
,
R.26
,
P.27
,
Q.106
,
T.107
,
G.108
,
T.109
,
G.110
,
K.111
,
T.112
,
F.113
,
E.118
Chain B:
K.34
Ligands:
MG.1
15
PLIP interactions
:
14 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:R.24
,
A:G.108
,
A:T.109
,
A:G.110
,
A:K.111
,
A:T.112
,
A:T.112
,
A:F.113
,
A:E.118
,
B:K.34
Water bridges:
A:T.107
,
A:T.107
Salt bridges:
A:K.111
pi-Stacking:
A:F.113
,
A:F.113
ADP.6:
14 residues within 4Å:
Chain A:
K.34
Chain B:
R.24
,
R.26
,
P.27
,
Q.106
,
T.107
,
G.108
,
T.109
,
G.110
,
K.111
,
T.112
,
F.113
,
E.118
Ligands:
MG.5
16
PLIP interactions
:
14 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:R.24
,
B:G.108
,
B:T.109
,
B:G.110
,
B:K.111
,
B:T.112
,
B:F.113
,
B:E.118
,
A:K.34
,
A:K.34
Water bridges:
B:T.107
,
B:K.111
,
B:T.112
Salt bridges:
B:K.111
pi-Stacking:
B:F.113
,
B:F.113
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Talapatra, S.K. et al., The Mitotic Kinesin Eg5 Overcomes Inhibition to the Phase I/II Clinical Candidate Sb743921 by an Allosteric Resistance Mechanism. J.Med.Chem. (2013)
Release Date
2012-10-31
Peptides
KINESIN-LIKE PROTEIN KIF11:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
KINESIN-LIKE PROTEIN KIF11
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme