SMTL ID : 4a27.1

Crystal structure of human synaptic vesicle membrane protein VAT-1 homolog-like protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: A.138, N.139, R.141, M.144, D.210, L.231, G.232, T.233 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.139, A:R.141, A:L.231, A:T.233 EDO.2: 3 residues within 4Å: Chain A: R.36, E.99, E.343 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.36, A:E.99, A:E.343 EDO.3: 4 residues within 4Å: Chain A: E.106, A.290, G.291, R.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.294 EDO.4: 8 residues within 4Å: Chain A: S.150, A.151, G.152, G.153, A.175, K.179, R.332, N.334 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.152, A:G.153, A:K.179, A:R.332, A:N.334 Water bridges: A:N.334 EDO.5: 8 residues within 4Å: Chain B: A.138, N.139, R.141, M.144, D.210, L.231, G.232, T.233 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.139, B:N.139, B:R.141, B:L.231 Water bridges: B:T.233, B:T.233 EDO.6: 3 residues within 4Å: Chain B: Q.29, D.30, D.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.30 EDO.7: 3 residues within 4Å: Chain B: K.38, L.316, D.341 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain B: Y.131, F.135, T.165 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.131, B:Y.131, B:T.165, B:T.165 EDO.9: 6 residues within 4Å: Chain B: R.19, L.20, L.319, E.320, V.322, K.323 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.20, B:L.319, B:V.322 Water bridges: B:K.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein. To be Published

Release Date

2011-10-19

Peptides

SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE