SMTL ID : 4a2h.1

Crystal Structure of Laccase from Coriolopsis gallica pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 10 residues within 4Å: Chain A: R.22, Q.23, N.54, M.57, H.153, L.154, A.155, V.158 Ligands: BMA.8, BMA.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.22, A:A.155 Hydrogen bonds: A:A.155 Water bridges: A:H.153

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 5 residues within 4Å: Chain A: N.326, S.382, P.384, N.433 Ligands: NAG.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.384 Hydrogen bonds: A:S.382, A:N.433 Water bridges: A:G.319, A:R.407 NAG.3: 3 residues within 4Å: Chain A: N.326 Ligands: NAG.2, BMA.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.326

4 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.394, C.450, I.452, H.455, F.460 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.394, A:C.450, A:H.455 CU.5: 4 residues within 4Å: Chain A: H.111, H.397, H.399, H.449 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.399, A:H.449, H2O.4 CU.6: 6 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.451 Ligands: CU.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.451, H2O.4 CU.7: 5 residues within 4Å: Chain A: H.64, H.66, H.397, H.399 Ligands: CU.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.397, H2O.3

3 x BMA: beta-D-mannopyranose(Non-functional Binders)

BMA.8: 2 residues within 4Å: Ligands: NAG-NAG.1, BMA.9 No protein-ligand interaction detected (PLIP) BMA.9: 2 residues within 4Å: Ligands: NAG-NAG.1, BMA.8 No protein-ligand interaction detected (PLIP) BMA.10: 1 residues within 4Å: Ligands: NAG.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De La Mora, E. et al., Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase. Acta Crystallogr.,Sect.D (2012)

Release Date

2011-10-12

Peptides

LACCASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LACCASE

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