SMTL ID : 4a34.2 (1 other biounit)

Crystal structure of the fucose mutarotase in complex with L-fucose from Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-10-mer

Ligands

10 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.1: 12 residues within 4Å: Chain A: D.30, N.32, Y.33, P.34, M.74, Y.112, L.129, Y.130, N.132 Chain E: H.22, Y.66, V.139 6 PLIP interactions: 3 interactions with chain E, 3 interactions with chain A Hydrophobic interactions: E:Y.66 Hydrogen bonds: E:H.22, A:D.30, A:Y.130, A:N.132 Salt bridges: E:H.22 FUL.3: 12 residues within 4Å: Chain A: H.22, Y.66, V.139 Chain B: D.30, N.32, Y.33, P.34, M.74, Y.112, L.129, Y.130, N.132 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.22, B:D.30, B:Y.130, B:N.132 Salt bridges: A:H.22 Hydrophobic interactions: B:Y.130 FUL.5: 12 residues within 4Å: Chain B: H.22, Y.66, V.139 Chain C: D.30, Y.33, P.34, M.74, R.108, Y.112, L.129, Y.130, N.132 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:Y.130, B:Y.66 Hydrogen bonds: C:D.30, C:Y.112, C:Y.130, C:N.132 Water bridges: C:N.32 Salt bridges: C:R.108, B:H.22 FUL.6: 12 residues within 4Å: Chain C: H.22, Y.66, V.139 Chain D: D.30, N.32, Y.33, P.34, R.108, Y.112, L.129, Y.130, N.132 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:Y.66, D:Y.130 Salt bridges: C:H.22, D:R.108 Hydrogen bonds: D:D.30, D:Y.112, D:Y.130, D:N.132 FUL.8: 12 residues within 4Å: Chain D: H.22, Y.66, V.139 Chain E: D.30, N.32, Y.33, M.74, R.108, Y.112, L.129, Y.130, N.132 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:Y.130, D:Y.66 Hydrogen bonds: E:D.30, E:Y.112, E:Y.130, E:N.132 Water bridges: E:N.32 Salt bridges: E:R.108, D:H.22 FUL.9: 12 residues within 4Å: Chain F: D.30, N.32, Y.33, P.34, R.108, Y.112, L.129, Y.130, N.132 Chain G: H.22, Y.66, V.139 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain G Hydrophobic interactions: F:Y.130, G:Y.66 Hydrogen bonds: F:D.30, F:N.32, F:Y.112, F:Y.130, F:N.132 Salt bridges: F:R.108, G:H.22 FUL.10: 11 residues within 4Å: Chain G: D.30, N.32, Y.33, R.108, Y.112, L.129, Y.130, N.132 Chain H: H.22, Y.66, V.139 8 PLIP interactions: 3 interactions with chain H, 5 interactions with chain G Hydrophobic interactions: H:Y.66, G:Y.130 Hydrogen bonds: H:H.22, G:D.30, G:Y.130, G:N.132 Salt bridges: H:H.22, G:R.108 FUL.12: 11 residues within 4Å: Chain H: D.30, N.32, Y.33, P.34, Y.112, L.129, Y.130, N.132 Chain I: H.22, Y.66, V.139 8 PLIP interactions: 3 interactions with chain I, 5 interactions with chain H Hydrophobic interactions: I:Y.66 Hydrogen bonds: I:H.22, H:D.30, H:Y.130, H:N.132 Salt bridges: I:H.22, H:R.108 Water bridges: H:N.32 FUL.13: 13 residues within 4Å: Chain I: D.30, N.32, Y.33, P.34, M.74, R.108, Y.112, L.129, Y.130, N.132 Chain J: H.22, Y.66, V.139 8 PLIP interactions: 7 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:Y.130 Hydrogen bonds: I:D.30, I:N.32, I:Y.112, I:Y.130, I:N.132 Salt bridges: I:R.108, J:H.22 FUL.15: 10 residues within 4Å: Chain F: H.22, V.139 Chain J: D.30, N.32, Y.33, P.34, Y.112, L.129, Y.130, N.132 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain J Salt bridges: F:H.22 Hydrophobic interactions: J:Y.130 Hydrogen bonds: J:D.30, J:Y.112, J:Y.130, J:N.132

5 x K: POTASSIUM ION(Non-covalent)

K.2: 2 residues within 4Å: Chain A: R.44 Chain J: R.44 5 PLIP interactions: 1 interactions with chain J, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: J:R.44, A:R.44, H2O.2, H2O.16, H2O.16 K.4: 2 residues within 4Å: Chain B: R.44 Chain F: R.44 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: B:R.44, F:R.44, H2O.3, H2O.3, H2O.10 K.7: 2 residues within 4Å: Chain D: R.44 Chain H: R.44 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 3 Ligand-Water interactions Metal complexes: D:R.44, H:R.44, H2O.6, H2O.7, H2O.13 K.11: 2 residues within 4Å: Chain C: R.44 Chain G: R.44 3 PLIP interactions: 1 interactions with chain G, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: G:R.44, C:R.44, H2O.5 K.14: 2 residues within 4Å: Chain E: R.44 Chain I: R.44 4 PLIP interactions: 1 interactions with chain E, 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: E:R.44, I:R.44, H2O.8, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Higgins, M.A. et al., Structure of the Fucose Mutarotase from Streptococcus Pneumoniae in Complex with L-Fucose. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-10-12

Peptides

RBSD/FUCU TRANSPORT PROTEIN FAMILY PROTEIN: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
P

G
Q

H
R

I
S

J
T

RBSD/FUCU TRANSPORT PROTEIN FAMILY PROTEIN

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