SMTL ID : 4a35.1

Crystal structure of human Mitochondrial enolase superfamily member 1 (ENOSF1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.221, K.223, D.251, E.277, E.306 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.251, A:E.277, A:E.306, H2O.15, H2O.15, H2O.17 MG.2: 7 residues within 4Å: Chain A: Y.188, I.370, D.373, Y.374, S.378, S.380, R.384 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.188, A:D.373, A:S.380 MG.10: 5 residues within 4Å: Chain B: K.221, K.223, D.251, E.277, E.306 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.251, B:E.277, B:E.306, H2O.38, H2O.38, H2O.39 MG.11: 7 residues within 4Å: Chain B: Y.188, I.370, D.373, Y.374, S.378, S.380, R.384 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.188, B:D.373, B:S.380

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.16, K.61, Y.429, W.435, L.439 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.16 Water bridges: A:K.61, A:K.61, A:Y.429, A:Y.429, B:Q.101 EDO.4: 7 residues within 4Å: Chain A: T.19, S.20, G.23, H.24, A.26, T.31, D.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.23, A:H.24 EDO.5: 4 residues within 4Å: Chain A: S.20, L.21, D.34, W.435 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20, A:D.34 EDO.6: 4 residues within 4Å: Chain A: Y.374, S.380, L.381, E.382 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.374, A:L.381, A:E.382 Water bridges: A:A.379 EDO.7: 2 residues within 4Å: Chain A: E.433, K.437 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.433, A:K.437 EDO.8: 3 residues within 4Å: Chain A: R.90, G.91, R.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.90 Water bridges: A:G.91 EDO.9: 4 residues within 4Å: Chain A: T.157, D.158, D.164, K.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.164, A:K.348 EDO.12: 5 residues within 4Å: Chain B: R.16, K.61, Y.429, W.435, L.439 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:Q.101, B:D.34, B:K.61, B:Y.429 Hydrogen bonds: B:R.16 EDO.13: 7 residues within 4Å: Chain B: T.19, S.20, G.23, H.24, A.26, T.31, D.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.23, B:H.24 EDO.14: 4 residues within 4Å: Chain B: S.20, L.21, D.34, W.435 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.20, B:D.34 Water bridges: B:D.34 EDO.15: 4 residues within 4Å: Chain B: Y.374, S.380, L.381, E.382 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.381, B:E.382 Water bridges: B:A.379 EDO.16: 2 residues within 4Å: Chain B: E.433, K.437 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.433, B:K.437 EDO.17: 3 residues within 4Å: Chain B: R.90, G.91, R.94 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.90 Water bridges: B:G.91 EDO.18: 4 residues within 4Å: Chain B: T.157, D.158, D.164, K.348 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.164, B:K.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wichelecki, D.J. et al., Enzymatic and structural characterization of rTS gamma provides insights into the function of rTS beta. Biochemistry (2014)

Release Date

2011-10-12

Peptides

MITOCHONDRIAL ENOLASE SUPERFAMILY MEMBER 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MITOCHONDRIAL ENOLASE SUPERFAMILY MEMBER 1