SMTL ID : 4a3n.1

Crystal Structure of HMG-BOX of Human SOX17

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.63, H.67 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.63, A:H.67, H2O.1 ZN.2: 2 residues within 4Å: Chain A: H.29 Chain B: E.32 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.29, B:E.32, H2O.3, H2O.3 ZN.3: 2 residues within 4Å: Chain A: E.54, E.57 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.54, A:E.54, A:E.57, H2O.3 ZN.4: 2 residues within 4Å: Chain B: H.63, H.67 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.63, B:H.67, H2O.3 ZN.5: 2 residues within 4Å: Chain A: E.32 Chain B: H.29 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.29, A:E.32, H2O.6, H2O.6 ZN.6: 2 residues within 4Å: Chain B: E.54, E.57 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.54, B:E.54, B:E.57, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, N. et al., Structural Basis of Human Transcription Factor Sry-Related Box 17 Binding to DNA. Protein Pept.Lett. (2013)

Release Date

2011-12-28

Peptides

TRANSCRIPTION FACTOR SOX-17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TRANSCRIPTION FACTOR SOX-17