SMTL ID : 4a3r.2 (1 other biounit)

Crystal structure of Enolase from Bacillus subtilis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-octamer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 16 residues within 4Å: Chain B: G.40, A.41, S.42, H.155, Q.163, E.164, E.205, D.314, L.337, K.339, H.367, R.368, S.369, K.390 Ligands: NA.2, NA.3 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:A.41, B:S.42, B:Q.163, B:D.314, B:K.339, B:S.366, B:S.369, B:S.369, B:S.369, B:S.369 Water bridges: B:S.42 Salt bridges: B:H.155, B:K.339, B:K.339, B:K.339, B:H.367, B:R.368, B:K.390 CIT.4: 16 residues within 4Å: Chain D: G.40, A.41, S.42, H.155, Q.163, E.164, E.205, D.314, L.337, K.339, H.367, R.368, S.369, K.390 Ligands: NA.5, NA.6 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:A.41, D:S.42, D:Q.163, D:D.314, D:K.339, D:S.366, D:S.369, D:S.369, D:S.369, D:S.369 Water bridges: D:S.42 Salt bridges: D:H.155, D:K.339, D:K.339, D:K.339, D:H.367, D:R.368, D:K.390 CIT.7: 16 residues within 4Å: Chain F: G.40, A.41, S.42, H.155, Q.163, E.164, E.205, D.314, L.337, K.339, H.367, R.368, S.369, K.390 Ligands: NA.8, NA.9 18 PLIP interactions: 18 interactions with chain F Hydrogen bonds: F:A.41, F:S.42, F:Q.163, F:D.314, F:K.339, F:S.366, F:S.369, F:S.369, F:S.369, F:S.369 Water bridges: F:S.42 Salt bridges: F:H.155, F:K.339, F:K.339, F:K.339, F:H.367, F:R.368, F:K.390 CIT.10: 16 residues within 4Å: Chain H: G.40, A.41, S.42, H.155, Q.163, E.164, E.205, D.314, L.337, K.339, H.367, R.368, S.369, K.390 Ligands: NA.11, NA.12 18 PLIP interactions: 18 interactions with chain H Hydrogen bonds: H:A.41, H:S.42, H:Q.163, H:D.314, H:K.339, H:S.366, H:S.369, H:S.369, H:S.369, H:S.369 Water bridges: H:S.42 Salt bridges: H:H.155, H:K.339, H:K.339, H:K.339, H:H.367, H:R.368, H:K.390

8 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain B: D.242, E.287, D.314, K.339, K.390 Ligands: CIT.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.339, B:K.390, B:K.390 Water bridges: B:D.288 NA.3: 4 residues within 4Å: Chain B: S.42, D.315, K.339 Ligands: CIT.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.339, B:K.339, B:R.368 Water bridges: B:S.42 NA.5: 6 residues within 4Å: Chain D: D.242, E.287, D.314, K.339, K.390 Ligands: CIT.4 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.314, D:K.339, D:K.390 Water bridges: D:D.288 NA.6: 4 residues within 4Å: Chain D: S.42, D.315, K.339 Ligands: CIT.4 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.315, D:K.339, D:R.368 Water bridges: D:S.42 NA.8: 6 residues within 4Å: Chain F: D.242, E.287, D.314, K.339, K.390 Ligands: CIT.7 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.314, F:K.339, F:K.390 Water bridges: F:D.288 NA.9: 4 residues within 4Å: Chain F: S.42, D.315, K.339 Ligands: CIT.7 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.315, F:K.339, F:R.368 Water bridges: F:S.42 NA.11: 6 residues within 4Å: Chain H: D.242, E.287, D.314, K.339, K.390 Ligands: CIT.10 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:K.339, H:K.390, H:K.390 Water bridges: H:D.288 NA.12: 4 residues within 4Å: Chain H: S.42, D.315, K.339 Ligands: CIT.10 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:S.42, H:K.339, H:R.368 Water bridges: H:S.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., Dissection of the Network of Interactions that Links RNA Processing with Glycolysis in the Bacillus Subtilis Degradosome. J.Mol.Biol. (2012)

Release Date

2012-08-15

Peptides

ENOLASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

ENOLASE

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