SMTL ID : 4a5w.1

Crystal structure of C5b6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: S.764, A.765, V.766, N.813, N.815, V.828 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.764 NAG.2: 2 residues within 4Å: Chain A: N.1534, F.1537 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.1537 NAG.5: 4 residues within 4Å: Chain B: E.221, N.303, T.305, G.348 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.348, B:G.348 NAG.9: 2 residues within 4Å: Chain B: N.834, S.835 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain B: L.135, N.138, N.141, D.151 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.151

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.4: 2 residues within 4Å: Chain B: T.17, C.18 No protein-ligand interaction detected (PLIP)

3 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.6: 4 residues within 4Å: Chain B: Q.546, W.547, R.566, E.581 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.547, B:W.547, B:R.566 BMA.7: 4 residues within 4Å: Chain B: A.495, D.498, C.549, W.550 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.495 BMA.8: 4 residues within 4Å: Chain B: D.4, A.7, W.8, R.27 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.4, B:W.8, B:W.8, B:R.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadders, M.A. et al., Assembly and Regulation of the Membrane Attack Complex Based on Structures of C5B6 and Sc5B9. Cell Rep. (2012)

Release Date

2012-03-14

Peptides

COMPLEMENT C5: A
COMPLEMENT COMPONENT C6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COMPLEMENT C5

COMPLEMENT COMPONENT C6

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