- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
TTP.1: 22 residues within 4Å:- Chain A: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Chain E: Q.28, K.101, S.102, S.103, R.106, Q.148
- Ligands: MG.2
19 PLIP interactions:11 interactions with chain A, 8 interactions with chain E- Hydrophobic interactions: A:V.115, A:F.122
- Hydrogen bonds: A:D.119, A:D.119, A:T.127, A:T.127, A:Y.162, A:K.170, A:Q.174, E:Q.28, E:S.102, E:S.102, E:S.103, E:R.106, E:Q.148
- Salt bridges: A:K.170, A:K.170, E:K.101, E:K.101
TTP.3: 22 residues within 4Å:- Chain B: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Chain D: Q.28, K.101, S.102, S.103, R.106, Q.148
- Ligands: MG.4
21 PLIP interactions:14 interactions with chain B, 7 interactions with chain D- Hydrophobic interactions: B:V.115, B:I.118, B:F.122
- Hydrogen bonds: B:D.119, B:D.119, B:D.119, B:T.127, B:T.127, B:Y.162, B:K.170, B:Y.171, B:Q.174, D:S.102, D:S.102, D:S.103, D:R.106, D:Q.148
- Salt bridges: B:K.170, B:K.170, D:K.101, D:K.101
TTP.6: 22 residues within 4Å:- Chain A: Q.28, K.101, S.102, S.103, R.106, Q.148
- Chain C: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Ligands: MG.7
20 PLIP interactions:9 interactions with chain A, 11 interactions with chain C- Hydrogen bonds: A:S.102, A:S.102, A:S.103, A:R.106, A:Q.148, C:D.119, C:D.119, C:T.127, C:T.127, C:K.170, C:Y.171, C:Q.174
- Water bridges: A:K.101, A:K.101
- Salt bridges: A:K.101, A:K.101, C:K.170, C:K.170
- Hydrophobic interactions: C:V.115, C:F.122
TTP.8: 22 residues within 4Å:- Chain D: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Chain F: Q.28, K.101, S.102, S.103, R.106, Q.148
- Ligands: MG.9
19 PLIP interactions:11 interactions with chain D, 8 interactions with chain F- Hydrophobic interactions: D:V.115, D:F.122
- Hydrogen bonds: D:D.119, D:D.119, D:T.127, D:T.127, D:K.170, D:Y.171, D:Q.174, F:S.102, F:S.102, F:S.103, F:R.106, F:Q.148, F:Q.148
- Salt bridges: D:K.170, D:K.170, F:K.101, F:K.101
TTP.10: 22 residues within 4Å:- Chain C: Q.28, K.101, S.102, S.103, R.106, Q.148
- Chain E: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Ligands: MG.11
20 PLIP interactions:13 interactions with chain E, 7 interactions with chain C- Hydrophobic interactions: E:V.115, E:I.118, E:F.122
- Hydrogen bonds: E:D.119, E:D.119, E:D.119, E:T.127, E:T.127, E:Y.162, E:K.170, E:Q.174, C:S.102, C:S.102, C:S.103, C:R.106, C:Q.148
- Salt bridges: E:K.170, E:K.170, C:K.101, C:K.101
TTP.12: 22 residues within 4Å:- Chain B: Q.28, K.101, S.102, S.103, R.106, Q.148
- Chain F: V.115, G.116, F.117, I.118, D.119, F.122, I.126, T.127, E.129, Y.162, G.168, S.169, K.170, Y.171, Q.174
- Ligands: MG.13
20 PLIP interactions:13 interactions with chain F, 7 interactions with chain B- Hydrophobic interactions: F:V.115, F:I.118, F:I.118, F:F.122
- Hydrogen bonds: F:D.119, F:D.119, F:T.127, F:T.127, F:K.170, F:Y.171, F:Q.174, B:S.102, B:S.102, B:S.103, B:R.106, B:Q.148
- Salt bridges: F:K.170, F:K.170, B:K.101, B:K.101
- 7 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain E: Q.28, D.33, Q.148
- Ligands: TTP.1
No protein-ligand interaction detected (PLIP)MG.4: 4 residues within 4Å:- Chain D: Q.28, D.33, Q.148
- Ligands: TTP.3
No protein-ligand interaction detected (PLIP)MG.5: 4 residues within 4Å:- Chain B: E.99, H.112, T.114
- Chain D: E.99
No protein-ligand interaction detected (PLIP)MG.7: 4 residues within 4Å:- Chain A: Q.28, D.33, Q.148
- Ligands: TTP.6
No protein-ligand interaction detected (PLIP)MG.9: 4 residues within 4Å:- Chain F: Q.28, D.33, Q.148
- Ligands: TTP.8
No protein-ligand interaction detected (PLIP)MG.11: 4 residues within 4Å:- Chain C: Q.28, D.33, Q.148
- Ligands: TTP.10
No protein-ligand interaction detected (PLIP)MG.13: 3 residues within 4Å:- Chain B: Q.28, D.33
- Ligands: TTP.12
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovgreen, M.N. et al., Dttp Inhibition of the Bifunctional Dctp Deaminase- Dutpase from Mycobacterium Tuberculosis is Ph Dependent: Kinetic Analyses and Crystal Structure of A115V Variant. To be Published
- Release Date
- 2012-10-10
- Peptides
- DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 7 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lovgreen, M.N. et al., Dttp Inhibition of the Bifunctional Dctp Deaminase- Dutpase from Mycobacterium Tuberculosis is Ph Dependent: Kinetic Analyses and Crystal Structure of A115V Variant. To be Published
- Release Date
- 2012-10-10
- Peptides
- DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F