SMTL ID : 4a6f.1

Crystal structure of Slm1-PH domain in complex with Phosphoserine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

hetero-2-2-mer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: F.11, K.38, T.39, A.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.40, A:D.41 PO4.4: 8 residues within 4Å: Chain A: T.30, N.32, F.33, H.35 Chain D: T.30, N.32, F.33, H.35 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain D Hydrogen bonds: A:T.30, A:N.32, A:N.32, A:F.33, D:N.32 Salt bridges: A:H.35, D:H.35 Water bridges: D:N.32, D:N.32 PO4.7: 4 residues within 4Å: Chain C: F.11, K.38, T.39, A.40 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.40, C:D.41 PO4.10: 8 residues within 4Å: Chain B: T.30, N.32, F.33, H.35 Chain C: T.30, N.32, F.33, H.35 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:T.30, B:N.32, C:N.32, C:N.32, C:F.33 Water bridges: B:N.32, B:N.32 Salt bridges: B:H.35, C:H.35

8 x SEP: PHOSPHOSERINE(Non-functional Binders)

SEP.2: 3 residues within 4Å: Chain A: F.4 Chain C: N.112, I.115 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:F.4 Water bridges: C:N.112 SEP.3: 4 residues within 4Å: Chain A: R.15, Y.22, K.79, K.99 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.22, A:K.79 Water bridges: A:S.76 Salt bridges: A:R.15, A:K.79, A:K.79, A:K.99 SEP.5: 6 residues within 4Å: Chain B: R.15, Y.22, S.73, T.74, K.79, K.99 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.74, B:K.99, B:K.99 Salt bridges: B:R.15, B:K.79, B:K.79, B:K.99 SEP.6: 7 residues within 4Å: Chain A: P.31, N.32, T.119 Chain B: T.5, E.6 Chain D: F.4, T.5 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: B:E.6, A:T.119 Water bridges: B:F.4, B:F.4, D:F.4 SEP.8: 3 residues within 4Å: Chain A: N.112, I.115 Chain C: F.4 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:F.4 Water bridges: A:N.112 SEP.9: 4 residues within 4Å: Chain C: R.15, Y.22, K.79, K.99 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.22, C:Y.22, C:K.79 Water bridges: C:S.76 Salt bridges: C:R.15, C:K.79, C:K.79, C:K.99 SEP.11: 6 residues within 4Å: Chain D: R.15, Y.22, S.73, T.74, K.79, K.99 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Y.22, D:S.73, D:T.74, D:K.99, D:K.99 Salt bridges: D:R.15, D:K.79, D:K.79, D:K.99 SEP.12: 7 residues within 4Å: Chain B: F.4, T.5 Chain C: P.31, N.32, T.119 Chain D: T.5, E.6 6 PLIP interactions: 1 interactions with chain B, 4 interactions with chain D, 1 interactions with chain C Water bridges: B:F.4, D:E.6, D:E.6, C:T.119 Hydrogen bonds: D:T.5, D:E.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anand, K. et al., Structural Analyses of Slm1-Ph Domain Demonstrate Ligand Binding in the Non-Canonical Site. Plos One (2012)

Release Date

2012-06-13

Peptides

PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1: AC
PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1

PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1

Related Entries With Identical Sequence