SMTL ID : 4a6j.1

Structural model of ParM filament based on CryoEM map

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 7.20 Å

Oligo State

homo-10-mer

Ligands

10 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 23 residues within 4Å: Chain A: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.9, A:T.10, A:T.10, A:T.10, A:N.11, A:N.11, A:K.13, A:G.173, A:T.174, A:T.175, A:T.175, A:T.175, A:T.203, A:D.223, A:R.229, A:G.281, A:Q.308 Salt bridges: A:K.13 ANP.3: 23 residues within 4Å: Chain B: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.9, B:T.10, B:T.10, B:T.10, B:N.11, B:N.11, B:K.13, B:G.173, B:T.174, B:T.175, B:T.175, B:T.175, B:T.203, B:D.223, B:R.229, B:G.281, B:Q.308 Salt bridges: B:K.13 ANP.5: 23 residues within 4Å: Chain C: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.6 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:S.9, C:T.10, C:T.10, C:T.10, C:N.11, C:N.11, C:K.13, C:G.173, C:T.174, C:T.175, C:T.175, C:T.175, C:T.203, C:D.223, C:R.229, C:G.281, C:Q.308 Salt bridges: C:K.13 ANP.7: 23 residues within 4Å: Chain D: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.8 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:S.9, D:T.10, D:T.10, D:T.10, D:N.11, D:N.11, D:K.13, D:G.173, D:T.174, D:T.175, D:T.175, D:T.175, D:T.203, D:D.223, D:R.229, D:G.281, D:Q.308 Salt bridges: D:K.13 ANP.9: 23 residues within 4Å: Chain E: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.10 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:S.9, E:T.10, E:T.10, E:T.10, E:N.11, E:N.11, E:K.13, E:G.173, E:T.174, E:T.175, E:T.175, E:T.175, E:T.203, E:D.223, E:R.229, E:G.281, E:Q.308 Salt bridges: E:K.13 ANP.11: 23 residues within 4Å: Chain F: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.12 18 PLIP interactions: 18 interactions with chain F Hydrogen bonds: F:S.9, F:T.10, F:T.10, F:T.10, F:N.11, F:N.11, F:K.13, F:G.173, F:T.174, F:T.175, F:T.175, F:T.175, F:T.203, F:D.223, F:R.229, F:G.281, F:Q.308 Salt bridges: F:K.13 ANP.13: 23 residues within 4Å: Chain G: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.14 18 PLIP interactions: 18 interactions with chain G Hydrogen bonds: G:S.9, G:T.10, G:T.10, G:T.10, G:N.11, G:N.11, G:K.13, G:G.173, G:T.174, G:T.175, G:T.175, G:T.175, G:T.203, G:D.223, G:R.229, G:G.281, G:Q.308 Salt bridges: G:K.13 ANP.15: 23 residues within 4Å: Chain H: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.16 20 PLIP interactions: 20 interactions with chain H Hydrogen bonds: H:G.8, H:S.9, H:T.10, H:T.10, H:T.10, H:N.11, H:N.11, H:K.13, H:E.148, H:G.173, H:T.174, H:T.175, H:T.175, H:T.175, H:T.203, H:D.223, H:R.229, H:G.281, H:Q.308 Salt bridges: H:K.13 ANP.17: 23 residues within 4Å: Chain I: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.18 18 PLIP interactions: 18 interactions with chain I Hydrogen bonds: I:S.9, I:T.10, I:T.10, I:T.10, I:N.11, I:N.11, I:K.13, I:G.173, I:T.174, I:T.175, I:T.175, I:T.175, I:T.203, I:D.223, I:R.229, I:G.281, I:Q.308 Salt bridges: I:K.13 ANP.19: 23 residues within 4Å: Chain J: G.8, S.9, T.10, N.11, K.13, E.148, L.171, G.172, G.173, T.174, T.175, V.199, T.203, D.223, I.227, R.229, G.280, G.281, G.282, E.284, L.285, Q.308 Ligands: MG.20 18 PLIP interactions: 18 interactions with chain J Hydrogen bonds: J:S.9, J:T.10, J:T.10, J:T.10, J:N.11, J:N.11, J:K.13, J:G.173, J:T.174, J:T.175, J:T.175, J:T.175, J:T.203, J:D.223, J:R.229, J:G.281, J:Q.308 Salt bridges: J:K.13

10 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.148 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: E.148 Ligands: ANP.3 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain C: E.148 Ligands: ANP.5 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain D: E.148 Ligands: ANP.7 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain E: E.148 Ligands: ANP.9 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain F: E.148 Ligands: ANP.11 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain G: E.148 Ligands: ANP.13 No protein-ligand interaction detected (PLIP) MG.16: 2 residues within 4Å: Chain H: E.148 Ligands: ANP.15 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain I: E.148 Ligands: ANP.17 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain J: E.148 Ligands: ANP.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gayathri, P. et al., A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation. Science (2012)

Release Date

2012-11-21

Peptides

PLASMID SEGREGATION PROTEIN PARM: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

PLASMID SEGREGATION PROTEIN PARM

Related Entries With Identical Sequence