SMTL ID : 4a6z.1

Cytochrome c peroxidase with bound guaiacol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: P.46, V.47, R.50, W.53, P.147, D.148, A.149, F.160, L.173, M.174, A.176, H.177, L.179, G.180, K.181, T.182, H.183, R.186, S.187, W.193, L.234, T.236, F.264, F.268 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.50, A:W.53, A:W.53, A:W.53, A:P.147, A:A.149, A:F.160, A:L.173, A:A.176, A:L.179, A:T.182, A:W.193, A:F.264, A:F.268 Hydrogen bonds: A:K.181, A:H.183, A:R.186, A:S.187 Water bridges: A:H.183 Salt bridges: A:R.50, A:H.183, A:H.183, A:R.186 pi-Stacking: A:W.53 pi-Cation interactions: A:R.50 Metal complexes: A:H.177, H2O.4

2 x JZ3: Guaiacol(Non-covalent)

JZ3.2: 7 residues within 4Å: Chain A: F.91, L.94, E.95, H.98, S.106, L.109, F.110 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.94, A:H.98, A:L.109, A:F.110 Hydrogen bonds: A:H.98 pi-Stacking: A:F.91 JZ3.3: 9 residues within 4Å: Chain A: L.32, D.36, I.42, G.43, Y.44, G.45, P.46, M.121, N.198 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.32, A:L.32 Hydrogen bonds: A:I.42, A:G.45, A:N.198 Water bridges: A:Y.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, E.J. et al., Crystal Structure of Guaiacol and Phenol Bound to a Heme Peroxidase. FEBS J. (2012)

Release Date

2012-10-17

Peptides

CYTOCHROME C PEROXIDASE, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C PEROXIDASE, MITOCHONDRIAL

Related Entries With Identical Sequence