SMTL ID : 4a71.1

cytochrome c peroxidase in complex with phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: P.46, V.47, V.49, R.50, W.53, P.147, D.148, A.149, F.160, L.173, M.174, A.176, H.177, L.179, G.180, K.181, T.182, H.183, R.186, S.187, W.193, L.234, T.236, F.268 24 PLIP interactions: 23 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.49, A:R.50, A:W.53, A:W.53, A:W.53, A:P.147, A:A.149, A:F.160, A:L.173, A:A.176, A:T.182, A:W.193, A:F.268 Hydrogen bonds: A:K.181, A:H.183, A:R.186 Water bridges: A:H.183 Salt bridges: A:R.50, A:H.183, A:H.183 pi-Stacking: A:W.53 pi-Cation interactions: A:R.50 Metal complexes: A:H.177, H2O.5

2 x IPH: PHENOL(Non-covalent)

IPH.2: 7 residues within 4Å: Chain A: F.91, L.94, E.95, H.98, S.106, L.109, F.110 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.91, A:L.94, A:L.109, A:F.110 Hydrogen bonds: A:H.98 IPH.3: 8 residues within 4Å: Chain A: L.32, I.42, G.43, Y.44, G.45, P.46, M.121, N.198 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.32, A:L.32, A:N.198 Hydrogen bonds: A:I.42, A:G.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, E.J. et al., Crystal Structure of Guaiacol and Phenol Bound to a Heme Peroxidase. FEBS J. (2012)

Release Date

2012-10-17

Peptides

CYTOCHROME C PEROXIDASE, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C PEROXIDASE, MITOCHONDRIAL