SMTL ID : 4a72.2 (1 other biounit)

Crystal structure of the omega transaminase from Chromobacterium violaceum in a mixture of apo and PLP-bound states

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 13 residues within 4Å: Chain A: S.119, G.120, S.121, Y.153, H.154, G.155, E.226, D.259, V.261, I.262, K.288 Chain B: F.320, T.321 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:E.226, A:V.261, A:K.288 Hydrogen bonds: A:G.120, A:S.121, A:S.121, A:K.288, B:T.321, B:T.321 Water bridges: A:S.121, A:S.121, A:E.226, B:Y.322 Salt bridges: A:K.288 pi-Stacking: A:Y.153 PLP.2: 13 residues within 4Å: Chain A: F.320, T.321 Chain B: S.119, G.120, S.121, Y.153, H.154, G.155, E.226, D.259, V.261, I.262, K.288 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:E.226, B:V.261, B:K.288 Hydrogen bonds: B:G.120, B:S.121, B:S.121, B:K.288, A:T.321, A:T.321, A:T.321 Water bridges: B:S.121, B:Y.153, B:E.226 Salt bridges: B:K.288 pi-Stacking: B:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svedendahl Humble, M. et al., Crystal Structures of the Chromobacterium Violaceum Omega-Transaminase Reveal Major Structural Rearrangements Upon Binding of Coenzyme Plp. FEBS J. (2012)

Release Date

2012-01-25

Peptides

OMEGA TRANSAMINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

OMEGA TRANSAMINASE

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