SMTL ID : 4a7v.1

Structure of human I113T SOD1 mutant complexed with dopamine in the p21 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

homo-dimer

Ligands

1 x LDP: L-DOPAMINE(Non-covalent)

LDP.1: 6 residues within 4Å: Chain A: E.21, Q.22, K.23, P.28, K.30, E.100 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.23, A:K.30, A:K.30 Hydrogen bonds: A:K.23, A:P.28, A:K.30 pi-Cation interactions: A:K.23

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.133, T.137, N.139, A.140, G.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.137, A:N.139, A:A.140, A:G.141 SO4.3: 3 residues within 4Å: Chain A: T.58, S.142, R.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.143 Water bridges: A:G.141, A:R.143 Salt bridges: A:R.143 SO4.6: 5 residues within 4Å: Chain B: E.133, T.137, N.139, A.140, G.141 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.139, B:A.140, B:G.141 Water bridges: B:K.122 SO4.7: 3 residues within 4Å: Chain B: T.58, S.142, R.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.143 Salt bridges: B:R.143

2 x CU: COPPER (II) ION(Non-covalent)

CU.4: 4 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.120 CU.8: 5 residues within 4Å: Chain B: H.46, H.48, H.63, V.118, H.120 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.120

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.63, A:H.71, A:H.80, A:D.83, A:D.83 ZN.9: 5 residues within 4Å: Chain B: H.63, H.71, H.80, D.83, K.136 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.63, B:H.71, B:H.80, B:D.83, B:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, G.S.A. et al., Ligand Binding and Aggregation of Pathogenic Sod1. Nat.Commun. (2013)

Release Date

2012-11-28

Peptides

SUPEROXIDE DISMUTASE [CU-ZN]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

SUPEROXIDE DISMUTASE [CU-ZN]

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