SMTL ID : 4a7z.1

Complex of bifunctional aldos-2-ulose dehydratase with the reaction intermediate ascopyrone M

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Y.35, H.215, H.295, H.337 Ligands: AY9.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.215, A:H.295, A:H.337 ZN.2: 6 residues within 4Å: Chain A: D.343, D.345, D.347, E.349, E.351, K.373 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.343, A:D.345, A:D.347, A:E.349, A:E.351 ZN.3: 5 residues within 4Å: Chain A: H.630, H.632, E.639, H.709 Ligands: AY9.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.630, A:H.632, A:E.639, A:H.709, H2O.6 ZN.7: 5 residues within 4Å: Chain B: Y.35, H.215, H.295, H.337 Ligands: AY9.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.215, B:H.295, B:H.337 ZN.8: 6 residues within 4Å: Chain B: D.343, D.345, D.347, E.349, E.351, K.373 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.343, B:D.345, B:D.347, B:E.349, B:E.351 ZN.9: 5 residues within 4Å: Chain B: H.630, H.632, E.639, H.709 Ligands: AY9.12 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.630, B:H.632, B:E.639, B:H.709, H2O.14

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 7 residues within 4Å: Chain A: D.101, I.102, T.103, K.104, N.105, F.107, D.109 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.101, A:T.103, A:F.107, A:D.109, H2O.1 MG.10: 7 residues within 4Å: Chain B: D.101, I.102, T.103, K.104, N.105, F.107, D.109 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.101, B:T.103, B:F.107, B:D.109, H2O.9

4 x AY9: Ascopyrone M(Non-covalent)

AY9.5: 12 residues within 4Å: Chain A: Y.35, Y.116, S.119, M.120, H.155, H.215, F.294, H.295, H.337, Y.414, Y.419 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.35, A:Y.116, A:M.120, A:Y.414 AY9.6: 10 residues within 4Å: Chain A: F.595, W.619, A.627, G.628, H.630, H.632, E.639, H.641, W.726 Ligands: ZN.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.641 AY9.11: 12 residues within 4Å: Chain B: Y.35, Y.116, S.119, M.120, H.155, H.215, F.294, H.295, H.337, Y.414, Y.419 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.35, B:Y.116, B:M.120, B:Y.414 AY9.12: 10 residues within 4Å: Chain B: F.595, W.619, A.627, G.628, H.630, H.632, E.639, H.641, W.726 Ligands: ZN.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.641

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Claesson, M. et al., Crystal Structure of Bifunctional Aldos-2-Ulose Dehydratase/Isomerase from Phanerochaete Chrysosporium with the Reaction Intermediate Ascopyrone M. J.Mol.Biol. (2012)

Release Date

2012-03-21

Peptides

ALDOS-2-ULOSE DEHYDRATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ALDOS-2-ULOSE DEHYDRATASE

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