SMTL ID : 4a84.1

Crystal Structure of Major Birch Pollen Allergen Bet v 1 a F30V mutant in complex with deoxycholate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)

DXC.1: 17 residues within 4Å: Chain A: F.22, I.23, D.27, V.30, I.56, D.69, Y.81, Y.83, V.85, I.98, N.100, N.118, Y.120, S.136, M.139, L.143 Ligands: DXC.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.22, A:V.30, A:V.30, A:I.56, A:V.85, A:L.143 Hydrogen bonds: A:I.23, A:Y.83, A:N.100, A:N.100, A:S.136 Water bridges: A:G.26 DXC.2: 15 residues within 4Å: Chain A: F.58, F.62, P.63, F.64, P.90, L.95, I.98, Y.120, V.128, Q.132, V.133, A.135, S.136, M.139 Ligands: DXC.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.58, A:P.63, A:F.64, A:P.90, A:L.95, A:I.98, A:Y.120, A:Q.132, A:A.135, A:M.139 Hydrogen bonds: A:F.64, A:F.64, A:Q.132

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain A: A.37, F.62, A.135, T.142 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.37, A:T.142 Hydrogen bonds: A:A.135 Water bridges: A:T.142

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.32, Y.150 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.154 Salt bridges: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kofler, S. et al., Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1. J.Mol.Biol. (2012)

Release Date

2012-05-30

Peptides

MAJOR POLLEN ALLERGEN BET V 1-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR POLLEN ALLERGEN BET V 1-A