SMTL ID : 4a8g.1

Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with dimethylbenzylammonium propane sulfonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x DMX: 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE(Non-covalent)

DMX.1: 11 residues within 4Å: Chain A: F.22, I.23, D.27, F.30, K.54, D.69, Y.81, Y.83, I.102, I.116, G.140 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.22, A:F.30, A:K.54, A:Y.81, A:I.102

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.32, Y.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.154 Salt bridges: A:K.32 SO4.3: 1 residues within 4Å: Chain A: E.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.131 SO4.4: 2 residues within 4Å: Chain A: D.75, T.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:T.77, A:N.78 Water bridges: A:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kofler, S. et al., Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1. J.Mol.Biol. (2012)

Release Date

2012-05-30

Peptides

MAJOR POLLEN ALLERGEN BET V 1-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR POLLEN ALLERGEN BET V 1-A

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