SMTL ID : 4a8m.3 (2 other biounits)

Non-Catalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial dsRNA virus phi6 from De Novo Initiation to Elongation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 16 residues within 4Å: Chain A: R.82, R.205, Q.207, R.271, D.455, E.492, A.496, F.497, L.498, G.499, E.530, N.627, Y.631, K.632 Ligands: MG.2, ATP.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.205, A:Q.207, A:R.271, A:R.271, A:A.496, A:F.497, A:L.498, A:G.499, A:N.627, A:N.627 Salt bridges: A:R.82, A:R.82, A:E.530, A:K.632 pi-Stacking: A:Y.631

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.324, D.455, E.492, A.496 Ligands: GTP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.455, A:E.492, A:A.496

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 6 residues within 4Å: Chain A: R.226, R.269, R.271, S.327, D.328 Ligands: GTP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.328 Salt bridges: A:R.226, A:R.269, A:R.269, A:R.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, S. et al., Noncatalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial Double-Stranded RNA Virus Phi6 from De Novo Initiation to Elongation. J.Virol. (2012)

Release Date

2012-07-04

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

RNA-DIRECTED RNA POLYMERASE

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