SMTL ID : 4a8v.1

Crystal Structure of Birch Pollen Allergen Bet v 1 isoform j in complex with 8-Anilinonaphthalene-1-sulfonate (ANS)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x 2AN: 8-ANILINO-1-NAPHTHALENE SULFONATE(Non-covalent)

2AN.1: 13 residues within 4Å: Chain A: Y.5, T.7, A.9, F.22, Y.83, I.102, I.116, N.118, I.133, S.136, K.137, G.140, E.141 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.5, A:T.7, A:T.7, A:A.9, A:F.22, A:I.116, A:I.116, A:I.133, A:K.137, A:E.141 Hydrogen bonds: A:Y.83

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: G.26, D.27, F.30, V.41, D.69, Y.81, Y.83 Ligands: TRS.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.30, A:F.30, A:V.41, A:D.69, A:Y.83 Hydrogen bonds: A:Y.81 Water bridges: A:G.26, A:D.27 MPD.6: 6 residues within 4Å: Chain A: F.58, F.64, Q.132, A.135, S.136, M.139 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.58, A:M.139

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: E.8, A.9, T.10, E.141, R.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.10, A:T.10 Salt bridges: A:R.145 SO4.4: 2 residues within 4Å: Chain A: K.134, E.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.138 Salt bridges: A:K.134 SO4.5: 2 residues within 4Å: Chain A: K.32, Y.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.150 Salt bridges: A:K.32 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 7 residues within 4Å: Chain A: I.23, D.27, G.48, K.54, V.74, Y.81 Ligands: MPD.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.54, A:K.54 Water bridges: A:I.23, A:G.26, A:D.27, A:G.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kofler, S. et al., Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1. J.Mol.Biol. (2012)

Release Date

2012-05-30

Peptides

MAJOR POLLEN ALLERGEN BET V 1-J: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR POLLEN ALLERGEN BET V 1-J

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