SMTL ID : 4a8z.1

Human myelin P2 protein, K112Q mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 19 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, G.35, P.40, T.55, S.57, F.59, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.18, A:F.18, A:V.27, A:P.40, A:T.55, A:F.59, A:D.78 Water bridges: A:R.108, A:R.108, A:Y.130, A:Y.130 Salt bridges: A:R.108, A:R.128 PLM.9: 19 residues within 4Å: Chain B: F.18, Y.21, M.22, L.25, V.27, G.35, P.40, T.55, S.57, F.59, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.18, B:F.18, B:V.27, B:P.40, B:T.55, B:F.59, B:D.78 Hydrogen bonds: B:Y.130 Water bridges: B:R.108, B:R.108, B:R.128 Salt bridges: B:R.108, B:R.128

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.54, N.61, E.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.54, A:R.54, A:N.61 Water bridges: A:N.61 GOL.3: 3 residues within 4Å: Chain A: S.3, N.4, K.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.3, A:S.3, A:N.4 Water bridges: A:S.3 GOL.4: 7 residues within 4Å: Chain A: S.15, E.16, N.17, F.18, D.19, D.20, N.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.15, A:N.17, A:D.19 Water bridges: A:F.18, A:F.18, A:D.20 GOL.10: 3 residues within 4Å: Chain B: R.54, N.61, E.63 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.54, B:R.54, B:N.61 Water bridges: B:N.61 GOL.11: 3 residues within 4Å: Chain B: S.3, N.4, K.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.3, B:S.3, B:N.4 Water bridges: B:S.3 GOL.12: 7 residues within 4Å: Chain B: S.15, E.16, N.17, F.18, D.19, D.20, N.36 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.15, B:N.17, B:D.19 Water bridges: B:F.18, B:F.18, B:D.20

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: A.38, K.39, S.57, T.58 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.39, A:T.58, A:T.58 Water bridges: A:T.41, A:T.58 Salt bridges: A:K.11 SO4.6: 2 residues within 4Å: Chain A: L.29, R.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.29 Water bridges: A:G.26, A:R.32 Salt bridges: A:R.32 SO4.7: 2 residues within 4Å: Chain A: K.47, G.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.48 SO4.8: 4 residues within 4Å: Chain A: D.49, K.67, Q.70 Chain B: G.1 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.49, A:Q.70, B:G.1 Water bridges: A:D.49, B:M.2 Salt bridges: A:K.67, B:K.46 SO4.13: 4 residues within 4Å: Chain B: A.38, K.39, S.57, T.58 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.39, B:T.58, B:T.58, B:T.58 Water bridges: B:T.41 Salt bridges: B:K.11 SO4.14: 2 residues within 4Å: Chain B: L.29, R.32 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.29 Water bridges: B:G.26, B:R.32 Salt bridges: B:R.32 SO4.15: 2 residues within 4Å: Chain B: K.47, G.48 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.48 SO4.16: 4 residues within 4Å: Chain A: G.1 Chain B: D.49, K.67, Q.70 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.49, B:Q.70, A:G.1 Salt bridges: B:K.67, A:K.46 Water bridges: A:M.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lehtimaki, M. et al., Structure-Function Relationships in the Myelin Peripheral Membrane Protein P2. To be Published

Release Date

2012-12-05

Peptides

MYELIN P2 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MYELIN P2 PROTEIN