SMTL ID : 4a95.3 (2 other biounits)

Plasmodium vivax N-myristoyltransferase with quinoline inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x 9MT: 3-(3-BUTYL-6-METHOXY-2-METHYL-QUINOLIN-4-YL)SULFANYLPROPANENITRILE(Non-covalent)

9MT.1: 12 residues within 4Å: Chain A: V.70, E.71, D.72, F.77, F.79, Y.185, H.187, S.293, L.304, Y.308, V.337, N.339 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.72, A:F.77, A:F.77, A:F.77, A:F.79, A:Y.308, A:V.337 Hydrogen bonds: A:S.293 pi-Stacking: A:F.79

1 x NHW: 2-oxopentadecyl-CoA(Non-covalent)

NHW.2: 33 residues within 4Å: Chain A: Y.2, K.3, F.4, W.5, N.68, Y.69, V.70, V.134, N.135, F.136, L.137, C.138, V.139, R.144, S.145, K.146, R.147, L.148, A.149, P.150, I.153, T.157, I.160, N.161, W.166, Q.167, A.168, Y.170, T.171, A.172, L.176, Y.367 Ligands: MG.4 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:W.5, A:W.5, A:Y.69, A:V.70, A:V.134, A:L.137, A:L.137, A:L.137, A:V.139, A:I.153, A:I.160, A:I.160, A:A.168, A:Y.170, A:Y.170, A:Y.367 Hydrogen bonds: A:K.3, A:F.4, A:W.5, A:Y.69, A:F.136, A:L.137, A:L.137, A:V.139, A:R.144, A:R.144, A:S.145, A:R.147, A:L.148, A:A.149 Water bridges: A:R.144, A:S.145, A:R.147, A:R.147, A:R.147, A:R.147 Salt bridges: A:R.147, A:R.147

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: T.221, L.222, R.332 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 7 residues within 4Å: Chain A: L.143, R.144, S.145, K.146, R.147, L.148 Ligands: NHW.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, V. et al., Discovery of Plasmodium Vivax N-Myristoyltransferase Inhibitors: Screening, Synthesis, and Structural Characterization of Their Binding Mode. J.Med.Chem. (2012)

Release Date

2012-06-27

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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