SMTL ID : 4aap.1 (1 other biounit)

Crystal structure of JMJD5 domain of human Lysine-specific demethylase 8 (KDM8) in complex with N-oxalylglycine (NOG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.144, D.146, H.223 Ligands: OGA.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.144, A:D.146, A:D.146, A:H.223 ZN.3: 2 residues within 4Å: Chain A: D.68, H.178 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.68, A:H.178

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: Y.95, W.133, S.141, H.144, D.146, N.150, L.152, K.159, H.223, V.225, S.235, W.237 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.133, A:S.141, A:N.150 Salt bridges: A:K.159, A:H.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of Jmjd5 Domain of Human Lysine- Specific Demethylase 8 (Kdm8) in Complex with N- Oxalylglycine (Nog). To be Published

Release Date

2012-02-29

Peptides

LYSINE-SPECIFIC DEMETHYLASE 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSINE-SPECIFIC DEMETHYLASE 8

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