- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 8.50 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x PO4: PHOSPHATE ION(Non-functional Binders)
- 14 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: D.87, G.88, S.151
- Ligands: ATP.3
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.87, A:D.87
MG.5: 4 residues within 4Å:- Chain B: D.87, G.88, S.151
- Ligands: ATP.6
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.87, B:D.87
MG.8: 4 residues within 4Å:- Chain C: D.87, G.88, S.151
- Ligands: ATP.9
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.87, C:D.87
MG.11: 4 residues within 4Å:- Chain D: D.87, G.88, S.151
- Ligands: ATP.12
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.87, D:D.87
MG.14: 4 residues within 4Å:- Chain E: D.87, G.88, S.151
- Ligands: ATP.15
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.87, E:D.87
MG.17: 4 residues within 4Å:- Chain F: D.87, G.88, S.151
- Ligands: ATP.18
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.87, F:D.87
MG.20: 4 residues within 4Å:- Chain G: D.87, G.88, S.151
- Ligands: ATP.21
2 PLIP interactions:2 interactions with chain G- Metal complexes: G:D.87, G:D.87
MG.23: 4 residues within 4Å:- Chain H: D.87, G.88
- Ligands: PO4.22, ATP.24
2 PLIP interactions:2 interactions with chain H- Metal complexes: H:D.87, H:D.87
MG.26: 4 residues within 4Å:- Chain I: D.87, G.88
- Ligands: PO4.25, ATP.27
2 PLIP interactions:2 interactions with chain I- Metal complexes: I:D.87, I:D.87
MG.29: 4 residues within 4Å:- Chain J: D.87, G.88
- Ligands: PO4.28, ATP.30
2 PLIP interactions:2 interactions with chain J- Metal complexes: J:D.87, J:D.87
MG.32: 4 residues within 4Å:- Chain K: D.87, G.88
- Ligands: PO4.31, ATP.33
2 PLIP interactions:2 interactions with chain K- Metal complexes: K:D.87, K:D.87
MG.35: 4 residues within 4Å:- Chain L: D.87, G.88
- Ligands: PO4.34, ATP.36
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:D.87, L:D.87
MG.38: 4 residues within 4Å:- Chain M: D.87, G.88
- Ligands: PO4.37, ATP.39
2 PLIP interactions:2 interactions with chain M- Metal complexes: M:D.87, M:D.87
MG.41: 4 residues within 4Å:- Chain N: D.87, G.88
- Ligands: PO4.40, ATP.42
2 PLIP interactions:2 interactions with chain N- Metal complexes: N:D.87, N:D.87
- 14 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 19 residues within 4Å:- Chain A: L.31, D.52, G.53, V.54, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, I.454, A.480, D.495
- Ligands: PO4.1, MG.2
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:G.53, A:V.54, A:G.88, A:G.88, A:T.89, A:T.90, A:T.91, A:T.91, A:G.415, A:D.495
ATP.6: 19 residues within 4Å:- Chain B: L.31, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, G.416, I.454, A.480, D.495
- Ligands: PO4.4, MG.5
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:G.53, B:V.54, B:G.88, B:G.88, B:T.89, B:T.90, B:T.91, B:T.91, B:N.153, B:G.415, B:G.416, B:D.495
ATP.9: 19 residues within 4Å:- Chain C: L.31, D.52, G.53, V.54, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, I.454, A.480, D.495
- Ligands: PO4.7, MG.8
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:G.53, C:V.54, C:G.88, C:G.88, C:T.89, C:T.90, C:T.91, C:T.91, C:G.415, C:D.495
ATP.12: 19 residues within 4Å:- Chain D: L.31, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, G.416, I.454, A.480, D.495
- Ligands: PO4.10, MG.11
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:G.53, D:V.54, D:G.88, D:G.88, D:T.89, D:T.90, D:T.91, D:T.91, D:G.415, D:G.416, D:D.495
ATP.15: 19 residues within 4Å:- Chain E: L.31, D.52, G.53, V.54, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, I.454, A.480, D.495
- Ligands: PO4.13, MG.14
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:G.53, E:V.54, E:G.88, E:G.88, E:T.89, E:T.90, E:T.91, E:T.91, E:G.415, E:D.495
ATP.18: 19 residues within 4Å:- Chain F: L.31, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, G.416, I.454, A.480, D.495
- Ligands: PO4.16, MG.17
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:G.53, F:V.54, F:G.88, F:G.88, F:T.89, F:T.90, F:T.91, F:T.91, F:G.415, F:G.416, F:D.495
ATP.21: 19 residues within 4Å:- Chain G: L.31, D.52, G.53, V.54, D.87, G.88, T.89, T.90, T.91, I.150, S.151, N.153, G.414, G.415, I.454, A.480, D.495
- Ligands: PO4.19, MG.20
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:G.53, G:V.54, G:G.88, G:G.88, G:T.89, G:T.90, G:T.91, G:T.91, G:G.415, G:D.495
ATP.24: 22 residues within 4Å:- Chain H: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.22, MG.23
15 PLIP interactions:15 interactions with chain H- Hydrogen bonds: H:G.32, H:D.52, H:G.53, H:G.88, H:T.89, H:T.89, H:T.90, H:T.90, H:T.91, H:N.153, H:G.415, H:N.479, H:A.480, H:A.481, H:D.495
ATP.27: 22 residues within 4Å:- Chain I: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.25, MG.26
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:G.32, I:D.52, I:G.53, I:G.88, I:T.89, I:T.89, I:T.90, I:T.90, I:T.91, I:N.153, I:G.415, I:N.479, I:A.480, I:A.481, I:D.495
ATP.30: 22 residues within 4Å:- Chain J: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.28, MG.29
15 PLIP interactions:15 interactions with chain J- Hydrogen bonds: J:G.32, J:D.52, J:G.53, J:G.88, J:T.89, J:T.89, J:T.90, J:T.90, J:T.91, J:N.153, J:G.415, J:N.479, J:A.480, J:A.481, J:D.495
ATP.33: 22 residues within 4Å:- Chain K: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.31, MG.32
15 PLIP interactions:15 interactions with chain K- Hydrogen bonds: K:G.32, K:D.52, K:G.53, K:G.88, K:T.89, K:T.89, K:T.90, K:T.90, K:T.91, K:N.153, K:G.415, K:N.479, K:A.480, K:A.481, K:D.495
ATP.36: 22 residues within 4Å:- Chain L: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.34, MG.35
15 PLIP interactions:15 interactions with chain L- Hydrogen bonds: L:G.32, L:D.52, L:G.53, L:G.88, L:T.89, L:T.89, L:T.90, L:T.90, L:T.91, L:N.153, L:G.415, L:N.479, L:A.480, L:A.481, L:D.495
ATP.39: 22 residues within 4Å:- Chain M: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.37, MG.38
15 PLIP interactions:15 interactions with chain M- Hydrogen bonds: M:G.32, M:D.52, M:G.53, M:G.88, M:T.89, M:T.89, M:T.90, M:T.90, M:T.91, M:N.153, M:G.415, M:N.479, M:A.480, M:A.481, M:D.495
ATP.42: 22 residues within 4Å:- Chain N: L.31, G.32, P.33, D.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495
- Ligands: PO4.40, MG.41
15 PLIP interactions:15 interactions with chain N- Hydrogen bonds: N:G.32, N:D.52, N:G.53, N:G.88, N:T.89, N:T.89, N:T.90, N:T.90, N:T.91, N:N.153, N:G.415, N:N.479, N:A.480, N:A.481, N:D.495
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Clare, D.K. et al., ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) (2012)
- Release Date
- 2012-12-12
- Peptides
- 60 KDA CHAPERONIN: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 8.50 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x PO4: PHOSPHATE ION(Non-functional Binders)
- 14 x MG: MAGNESIUM ION(Non-covalent)
- 14 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Clare, D.K. et al., ATP-Triggered Conformational Changes Delineate Substrate-Binding and -Folding Mechanics of the Groel Chaperonin. Cell(Cambridge,Mass.) (2012)
- Release Date
- 2012-12-12
- Peptides
- 60 KDA CHAPERONIN: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N