SMTL ID : 4abt.1

Crystal structure of Type IIF restriction endonuclease NgoMIV with cognate uncleaved DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-tetramer

Ligands

6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: D.140, C.186 Chain C: C.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.140, A:C.186, H2O.2, H2O.4, H2O.4 CA.2: 3 residues within 4Å: Chain B: D.140, C.186 Chain D: C.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.140, B:C.186, H2O.7, H2O.7, H2O.8 CA.3: 1 residues within 4Å: Ligands: CA.6 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain E: D.140, C.186 Chain G: C.5 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.140, E:C.186, H2O.12, H2O.13, H2O.13 CA.5: 3 residues within 4Å: Chain F: D.140, C.186 Chain H: C.5 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:D.140, F:C.186, H2O.16, H2O.17, H2O.17 CA.6: 1 residues within 4Å: Ligands: CA.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manakova, E.N. et al., Structure of Type Iif Restriction Endonuclease Ngomiv with Cognate Uncleaved DNA. To be Published

Release Date

2011-12-28

Peptides

TYPE-2 RESTRICTION ENZYME NGOMIV: ABEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

TYPE-2 RESTRICTION ENZYME NGOMIV

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