SMTL ID : 4ac0.1

TETR(B) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)

MIY.1: 16 residues within 4Å: Chain A: H.63, F.66, N.81, F.85, H.99, T.102, R.103, P.104, Q.108, T.111, L.112, Q.115, L.130, L.133 Chain B: F.176 Ligands: MG.2 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:F.176, B:F.176, A:P.104 Hydrogen bonds: A:H.63, A:N.81, A:T.102, A:Q.115 Water bridges: A:T.102 MIY.5: 16 residues within 4Å: Chain A: F.176 Chain B: H.63, F.66, N.81, F.85, H.99, T.102, R.103, P.104, Q.108, T.111, L.112, Q.115, L.130, L.133 Ligands: MG.6 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.104, A:F.176, A:F.176 Hydrogen bonds: B:H.63, B:N.81, B:T.102, B:Q.115 Water bridges: A:E.146

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: H.99, T.102 Ligands: MIY.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.99, H2O.1, H2O.1, H2O.1 MG.6: 3 residues within 4Å: Chain B: H.99, T.102 Ligands: MIY.5 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.99, H2O.2, H2O.2, H2O.2

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: R.61, H.62, H.92 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.61, A:H.62, A:H.92 PO4.4: 1 residues within 4Å: Chain A: K.28 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.28 PO4.7: 3 residues within 4Å: Chain B: R.61, H.62, H.92 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.61, B:H.62, B:H.92 PO4.8: 1 residues within 4Å: Chain B: K.28 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkers, G. et al., Tetr(B) in Complex with Minocycline and Magnesium. To be Published

Release Date

2012-12-26

Peptides

TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON TN1 0: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON TN1 0