- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: S.100, Y.101, Y.108
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.100, A:Y.108
GOL.8: 9 residues within 4Å:- Chain B: T.347, T.354, P.355, A.356, L.357
- Chain C: R.217, H.308, T.311, T.312
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.217, C:T.311
GOL.9: 7 residues within 4Å:- Chain B: G.77, T.78, Q.79, R.252
- Chain C: A.268, G.270, H.298
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:Q.79, B:R.252, B:R.252, C:H.298
- Water bridges: B:T.78, B:R.80
GOL.10: 3 residues within 4Å:- Chain B: S.100, Y.101, Y.108
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.100
GOL.14: 2 residues within 4Å:- Chain C: R.342
- Ligands: GOL.16
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.342
GOL.15: 5 residues within 4Å:- Chain B: N.103, P.104, Y.108
- Chain C: P.121, F.123
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:F.123, B:N.103, B:P.104
- Water bridges: C:G.124, B:S.107
GOL.16: 6 residues within 4Å:- Chain C: R.342, A.362, P.363, G.364, G.383
- Ligands: GOL.14
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.342, C:R.342, C:A.362, C:G.383
GOL.17: 10 residues within 4Å:- Chain A: R.217, H.308, T.311, T.312
- Chain C: T.347, G.348, T.354, P.355, A.356, L.357
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:T.347, A:R.217, A:T.311
GOL.18: 3 residues within 4Å:- Chain C: S.100, Y.101, Y.108
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.100
GOL.19: 6 residues within 4Å:- Chain B: K.110
- Chain C: H.125, R.256, L.257, D.262, L.264
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.256, C:R.256, C:D.262, B:K.110
- Water bridges: C:L.257, C:L.257, C:D.262, C:D.262
GOL.20: 3 residues within 4Å:- Chain C: W.65, R.285, K.286
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:W.65, C:K.286, C:K.286
- Water bridges: C:C.51
GOL.21: 6 residues within 4Å:- Chain B: S.433, T.435
- Chain C: G.63, W.65, V.66, P.67
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Water bridges: B:S.433
- Hydrogen bonds: C:G.63, C:W.65
- 3 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: N.88, A.89, D.136, T.137
- Ligands: ACT.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.89, A:D.136, A:T.137, H2O.5
CA.11: 5 residues within 4Å:- Chain B: N.88, A.89, D.136, T.137
- Ligands: ACT.12
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.89, B:D.136, B:T.137, H2O.20
CA.22: 5 residues within 4Å:- Chain C: N.88, A.89, D.136, T.137
- Ligands: ACT.24
5 PLIP interactions:3 interactions with chain C, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: C:A.89, C:D.136, C:T.137, ACT.24, H2O.35
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 5 residues within 4Å:- Chain A: N.88, T.135, D.136, T.137
- Ligands: CA.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.88, A:N.88, A:T.137
ACT.12: 5 residues within 4Å:- Chain B: N.88, T.135, D.136, T.137
- Ligands: CA.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.88, B:N.88, B:T.137, B:T.137
ACT.24: 5 residues within 4Å:- Chain C: N.88, T.135, D.136, T.137
- Ligands: CA.22
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.88, C:T.137
- Water bridges: C:T.135, C:T.137
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dubois, R.M. et al., Functional and Evolutionary Insight from the Crystal Structure of Rubella Virus Protein E1. Nature (2013)
- Release Date
- 2013-01-09
- Peptides
- E1 ENVELOPE GLYCOPROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dubois, R.M. et al., Functional and Evolutionary Insight from the Crystal Structure of Rubella Virus Protein E1. Nature (2013)
- Release Date
- 2013-01-09
- Peptides
- E1 ENVELOPE GLYCOPROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C