- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: T.78, Q.79, R.252
- Chain B: A.268, H.298
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.79, A:R.252, A:R.252, B:A.268, B:H.298
- Water bridges: A:T.78
GOL.3: 4 residues within 4Å:- Chain A: T.277, V.279, H.290, R.292
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.292, A:R.292
GOL.8: 3 residues within 4Å:- Chain B: S.100, Y.101, Y.108
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.100
- Water bridges: B:Y.101
GOL.13: 3 residues within 4Å:- Chain C: S.100, Y.101, Y.108
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.101
- Water bridges: C:Y.108
- 2 x NA: SODIUM ION(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-covalent)
CA.5: 6 residues within 4Å:- Chain A: N.88, A.89, D.136, T.137, V.138
- Ligands: NA.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.89, A:D.136, A:T.137, H2O.5
CA.9: 5 residues within 4Å:- Chain B: N.88, A.89, D.136, T.137
- Ligands: ACT.10
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.89, B:D.136, B:T.137, H2O.19
CA.16: 6 residues within 4Å:- Chain C: N.88, A.89, D.136, T.137, V.138
- Ligands: NA.15
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:A.89, C:D.136, C:T.137, H2O.33
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 3 residues within 4Å:- Chain A: S.91, S.92, D.136
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:D.136
- Hydrogen bonds: A:S.91
ACT.10: 5 residues within 4Å:- Chain B: N.88, T.135, D.136, T.137
- Ligands: CA.9
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.88, B:N.88, B:T.137
ACT.11: 3 residues within 4Å:- Chain B: Y.90, S.92, D.136
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Y.90
ACT.14: 3 residues within 4Å:- Chain B: V.386
- Chain C: S.313, D.314
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:D.314
- Water bridges: C:H.317, B:A.388
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dubois, R.M. et al., Functional and Evolutionary Insight from the Crystal Structure of Rubella Virus Protein E1. Nature (2013)
- Release Date
- 2013-01-09
- Peptides
- E1 ENVELOPE GLYCOPROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dubois, R.M. et al., Functional and Evolutionary Insight from the Crystal Structure of Rubella Virus Protein E1. Nature (2013)
- Release Date
- 2013-01-09
- Peptides
- E1 ENVELOPE GLYCOPROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C