SMTL ID : 4adm.1

Crystal structure of Rv1098c in complex with meso-tartrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: S.426, S.427, P.428, A.450, L.451, K.455, I.457 Chain D: L.325 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.450 Water bridges: A:I.457 GOL.2: 9 residues within 4Å: Chain B: S.426, S.427, P.428, A.450, L.451, R.454, K.455, I.457 Chain C: L.325 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.450, B:K.455 Water bridges: B:R.454, B:I.457

2 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.3: 14 residues within 4Å: Chain A: S.126, T.128, S.160, S.161, N.162 Chain B: T.208, H.209 Chain C: G.339, S.340, S.341, I.342, M.343, K.346, N.348 12 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B, 4 interactions with chain C Hydrogen bonds: A:S.126, A:S.160, A:S.161, A:N.162, A:N.162, B:T.208, B:H.209, C:S.341, C:I.342, C:N.348 Salt bridges: B:H.209, C:K.346 SRT.4: 14 residues within 4Å: Chain A: T.208, H.209 Chain B: S.126, T.128, S.160, S.161, N.162 Chain D: G.339, S.340, S.341, I.342, M.343, K.346, N.348 12 PLIP interactions: 4 interactions with chain D, 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: D:S.341, D:I.342, D:N.348, B:S.126, B:S.160, B:S.161, B:N.162, B:N.162, A:T.208, A:H.209 Salt bridges: D:K.346, A:H.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mechaly, A.E. et al., Conformational Changes Upon Ligand Binding in the Essential Class II Fumarase Rv1098C from Mycobacterium Tuberculosis. FEBS Lett. (2012)

Release Date

2012-04-25

Peptides

FUMARATE HYDRATASE CLASS II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

FUMARATE HYDRATASE CLASS II

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