SMTL ID : 4adn.1

Fusidic acid resistance protein FusB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.166, C.169, C.198, C.204 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.166, A:C.169, A:C.198, A:C.204 ZN.10: 4 residues within 4Å: Chain B: C.166, C.169, C.198, C.204 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.166, B:C.169, B:C.198, B:C.204

8 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: N.31, T.35 Chain B: Y.21, R.28 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.31, A:T.35, A:T.35 Water bridges: B:R.28 NA.3: 3 residues within 4Å: Chain A: R.28, N.31 Chain B: R.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.31 NA.4: 3 residues within 4Å: Chain A: S.24, K.171 Chain B: N.31 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.31, A:S.24, A:S.24 NA.5: 3 residues within 4Å: Chain A: L.27, K.30, N.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.27, A:N.31 NA.9: 2 residues within 4Å: Chain A: N.31 Chain B: K.171 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.31, B:S.24, B:S.24 Water bridges: B:K.171 NA.11: 4 residues within 4Å: Chain A: Y.21, R.28 Chain B: N.31, T.35 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.31, B:T.35 Water bridges: A:R.28 NA.12: 6 residues within 4Å: Chain B: H.17, D.210, I.211, N.212 Ligands: IMD.13, GOL.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.17, B:I.211, B:N.212 NA.18: 1 residues within 4Å: Chain B: T.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.21, A:Y.21

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: S.77, N.78 Ligand excluded by PLIP

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 5 residues within 4Å: Chain A: E.146, N.212, Y.215, N.216, D.219 No protein-ligand interaction detected (PLIP) IMD.13: 4 residues within 4Å: Chain B: Y.21, T.209 Ligands: NA.12, GOL.14 1 PLIP interactions: 1 interactions with chain B pi-Stacking: B:Y.21

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: N.132, R.199, D.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.132, A:R.199 Water bridges: A:S.201, A:I.202 GOL.14: 6 residues within 4Å: Chain B: H.17, Q.18, I.211, N.212 Ligands: NA.12, IMD.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.18, B:N.212 GOL.15: 4 residues within 4Å: Chain B: K.30, K.34, S.77, N.78 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:N.170, B:K.30, B:K.34, B:N.78 Water bridges: B:L.76, B:S.77, B:K.79

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.16: 7 residues within 4Å: Chain A: K.79, E.82 Chain B: V.162, K.163, G.164, F.165, Y.196 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:K.163, B:Y.196, A:N.86 PEG.17: 7 residues within 4Å: Chain A: K.34 Chain B: C.169, N.170, K.171, T.209, D.210, Q.213 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.209, B:Q.213, B:Q.213 Water bridges: B:D.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, X. et al., Structure and Function of Fusb: An Elongation Factor G-Binding Fusidic Acid Resistance Protein Active in Ribosomal Translocation and Recycling. Open Biol. (2012)

Release Date

2012-03-07

Peptides

FAR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAR1

Related Entries With Identical Sequence