SMTL ID : 4afe.1

Nek2 bound to hybrid compound 21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GGY: 4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{[(1R,2Z)-4,4,4-TRIFLUORO-1-METHYLBUT-2-EN-1-YL]OXY}BENZAMIDE(Non-covalent)

GGY.1: 17 residues within 4Å: Chain A: Y.12, I.14, G.15, Y.19, C.22, V.35, K.37, M.86, E.87, Y.88, C.89, E.90, G.92, F.148, G.158, D.159, F.160 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.14, A:Y.19, A:Y.88, A:F.148, A:F.160 Hydrogen bonds: A:K.37, A:E.87, A:C.89, A:D.159, A:D.159 pi-Stacking: A:F.148 Halogen bonds: A:Y.19

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.19, K.37, D.159, F.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Innocenti, P. et al., Design of Potent and Selective Hybrid Inhibitors of the Mitotic Kinase Nek2: Structure-Activity Relationship, Structural Biology, and Cellular Activity. J.Med.Chem. (2012)

Release Date

2012-04-25

Peptides

SERINE/THREONINE-PROTEIN KINASE NEK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE NEK2

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