SMTL ID : 4ag4.1

Crystal structure of a DDR1-Fab complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: Y.184, N.186, W.225 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.225 NAG-NAG.2: 2 residues within 4Å: Chain A: N.235, H.236 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: Q.205, D.208, V.210, S.335, E.336 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Q.205, A:D.208, A:V.210, A:S.335, A:E.336 CA.4: 7 residues within 4Å: Chain A: Y.184, N.186, S.188, Q.205, G.227, Y.228, Y.230 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:N.186, A:Y.228, A:Y.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carafoli, F. et al., Structure of the Discoidin Domain Receptor 1 Extracellular Region Bound to an Inhibitory Fab Fragment Reveals Features Important for Signaling. Structure (2012)

Release Date

2012-04-18

Peptides

EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1: A
MONOCLONAL ANTIBODY 3E3 HEAVY CHAIN: B
MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1

MONOCLONAL ANTIBODY 3E3 HEAVY CHAIN

MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN