SMTL ID : 4ag8.1

CRYSTAL STRUCTURE OF THE VEGFR2 KINASE DOMAIN IN COMPLEX WITH AXITINIB (AG-013736) (N-Methyl-2-(3-((E)-2-pyridin-2-yl-vinyl)-1H- indazol-6-ylsulfanyl)-benzamide)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x AXI: AXITINIB(Non-covalent)

AXI.1: 17 residues within 4Å: Chain A: L.35, V.43, A.61, K.63, E.80, V.94, V.109, V.111, E.112, F.113, C.114, K.115, G.117, L.180, C.190, D.191, F.192 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.35, A:V.43, A:K.63, A:V.109, A:V.111, A:V.111, A:L.180 Hydrogen bonds: A:E.80, A:C.114, A:D.191 Water bridges: A:N.118 pi-Stacking: A:F.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mctigue, M. et al., Molecular Conformations, Interactions, and Properties Associated with Drug Efficiency and Clinical Performance Among Vegfr Tk Inhibitors. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2

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