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SMTL ID : 4ag9.1
C. elegans glucosamine-6-phosphate N-acetyltransferase (GNA1): ternary complex with coenzyme A and GlcNAc
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.76 Å
Oligo State
homo-dimer
Ligands
2 x
COA
:
COENZYME A
(Non-covalent)
COA.1:
14 residues within 4Å:
Chain A:
V.106
,
V.108
,
R.113
,
R.114
,
Q.115
,
K.116
,
L.117
,
G.118
,
A.119
,
E.144
,
L.145
,
P.147
,
F.148
,
Q.151
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:V.106
,
A:L.145
Hydrogen bonds:
A:R.113
,
A:R.114
,
A:R.114
,
A:R.114
,
A:K.116
,
A:G.118
,
A:A.119
,
A:E.144
,
A:Q.151
Water bridges:
A:Q.115
,
A:Q.115
Salt bridges:
A:R.114
pi-Stacking:
A:F.148
COA.4:
15 residues within 4Å:
Chain B:
V.106
,
V.108
,
R.113
,
R.114
,
Q.115
,
K.116
,
L.117
,
G.118
,
A.119
,
V.142
,
E.144
,
L.145
,
P.147
,
F.148
,
Q.151
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:V.106
Hydrogen bonds:
B:V.108
,
B:R.114
,
B:R.114
,
B:K.116
,
B:G.118
,
B:E.144
,
B:Q.151
Water bridges:
B:R.113
,
B:Q.115
,
B:Q.115
Salt bridges:
B:K.116
pi-Stacking:
B:F.148
2 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.2:
5 residues within 4Å:
Chain A:
P.66
,
N.67
,
Y.68
,
V.88
,
V.89
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:N.67
,
A:V.89
Water bridges:
A:P.66
,
A:V.89
EDO.6:
5 residues within 4Å:
Chain B:
P.66
,
N.67
,
Y.68
,
V.88
,
V.89
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:V.89
Water bridges:
B:Y.68
,
B:V.89
2 x
16G
:
2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
(Non-covalent)
16G.3:
12 residues within 4Å:
Chain A:
T.44
,
V.103
,
E.104
,
D.105
,
V.106
,
L.139
,
E.140
,
Y.149
,
R.164
Chain B:
I.94
,
H.95
,
K.136
22
PLIP interactions
:
16 interactions with chain A
,
6 interactions with chain B
Hydrophobic interactions:
A:L.139
Hydrogen bonds:
A:T.44
,
A:T.44
,
A:E.104
,
A:D.105
,
A:D.105
,
A:D.105
,
A:V.106
,
A:E.140
,
A:E.140
Water bridges:
A:E.140
,
A:R.164
,
A:R.164
,
A:R.164
,
A:R.164
,
B:K.136
,
B:K.136
,
B:K.136
Salt bridges:
A:R.164
,
B:H.95
,
B:K.136
,
B:K.136
16G.5:
11 residues within 4Å:
Chain A:
I.94
,
H.95
,
K.136
Chain B:
T.44
,
V.103
,
E.104
,
D.105
,
V.106
,
E.140
,
Y.149
,
R.164
25
PLIP interactions
:
16 interactions with chain B
,
9 interactions with chain A
Hydrophobic interactions:
B:V.106
Hydrogen bonds:
B:T.44
,
B:T.44
,
B:E.104
,
B:D.105
,
B:D.105
,
B:V.106
,
B:E.140
,
B:E.140
,
B:E.140
,
A:K.92
,
A:K.92
,
A:R.100
Water bridges:
B:E.140
,
B:R.164
,
B:R.164
,
B:R.164
,
B:R.164
,
A:K.136
,
A:K.136
,
A:K.136
Salt bridges:
B:R.164
,
A:H.95
,
A:K.136
,
A:K.136
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dorfmueller, H.C. et al., Structural and Biochemical Characterization of a Trapped Coenzyme a Adduct of Caenorhabditis Elegans Glucosamine-6-Phosphate N-Acetyltransferase 1. Acta Crystallogr.,Sect.D (2012)
Release Date
2012-07-25
Peptides
GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE
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4ag7.1
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