SMTL ID : 4ah2.1

HLA-DR1 with covalently linked CLIP106-120 in canonical orientation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.45, V.105, Y.151 Chain B: D.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.45, A:R.45 Water bridges: A:S.134 GOL.2: 6 residues within 4Å: Chain A: N.85, W.169 Chain B: D.33, T.34, R.35, R.37 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.33, A:N.85, A:N.85 Water bridges: B:R.37 GOL.3: 4 residues within 4Å: Chain A: E.142, D.143, H.144 Chain B: E.67 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.142, B:E.67 Water bridges: B:E.67 GOL.4: 4 residues within 4Å: Chain B: S.119, Q.123, R.124, R.125 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.119, B:R.125, B:R.125 Water bridges: A:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlundt, A. et al., Peptide Linkage to the Alpha-Subunit of Mhcii Creates a Stably Inverted Antigen Presentation Complex. J.Mol.Biol. (2012)

Release Date

2012-08-01

Peptides

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN\,DRB1-1 BETA CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN\,DRB1-1 BETA CHAIN

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