SMTL ID : 4ahz.1

Flo5A showing a heptanuclear gadolinium cluster on its surface after 60 min of soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

11 x GD: GADOLINIUM ATOM(Non-covalent)(Non-functional Binders)

GD.1: 5 residues within 4Å: Chain A: D.159, D.160, N.223, V.225, W.227 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:V.225, A:W.227, H2O.7, H2O.7, H2O.9 GD.2: 5 residues within 4Å: Chain A: D.77, D.244 Ligands: GD.5, GD.6, GD.7 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.244, A:D.244, H2O.4, H2O.4, H2O.4 GD.3: 5 residues within 4Å: Chain A: D.81, D.124 Ligands: GD.4, GD.5, GD.8 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.81, A:D.81, A:D.124, H2O.4, H2O.4 GD.4: 3 residues within 4Å: Chain A: D.124 Ligands: GD.3, GD.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.124, H2O.6, H2O.6, H2O.10 GD.5: 6 residues within 4Å: Ligands: GD.2, GD.3, GD.4, GD.6, GD.7, GD.8 No protein-ligand interaction detected (PLIP) GD.6: 3 residues within 4Å: Ligands: GD.2, GD.5, GD.7 No protein-ligand interaction detected (PLIP) GD.7: 4 residues within 4Å: Chain A: D.77 Ligands: GD.2, GD.5, GD.6 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.77, H2O.4, H2O.4 GD.8: 3 residues within 4Å: Chain A: D.124 Ligands: GD.3, GD.5 No protein-ligand interaction detected (PLIP) GD.9: 1 residues within 4Å: Chain A: E.235 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.235, H2O.9, H2O.9, H2O.9 GD.10: 2 residues within 4Å: Chain A: E.178, D.254 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.178, A:E.178, H2O.8, H2O.9 GD.11: 2 residues within 4Å: Chain A: S.169, E.173 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.169, A:E.173, A:E.173

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 6 residues within 4Å: Chain A: Y.101, C.106, K.107, G.108, M.109, G.110 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: P.85, F.93, P.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veelders, M. et al., Complex Gadolinium-Oxo Clusters Formed Along Concave Protein Surfaces. Chembiochem (2012)

Release Date

2012-10-03

Peptides

FLOCCULATION PROTEIN FLO5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FLOCCULATION PROTEIN FLO5

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