SMTL ID : 4aig.1

ADAMALYSIN II WITH PHOSPHONATE INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.141, H.145, H.151 Ligands: FLX.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.141, A:H.145, A:H.151 ZN.4: 4 residues within 4Å: Chain B: H.141, H.145, H.151 Ligands: FLX.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.141, B:H.145, B:H.151

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.8, D.92, C.196, N.199 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.8, A:D.92, A:D.92, A:C.196, H2O.1 CA.5: 4 residues within 4Å: Chain B: E.8, D.92, C.196, N.199 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.8, B:D.92, B:D.92, B:C.196, H2O.8

2 x FLX: N-[(FURAN-2-YL)CARBONYL]-(S)-LEUCYL-(R)-[1-AMINO-2(1H-INDOL-3-YL)ETHYL]-PHOSPHONIC ACID(Non-covalent)

FLX.3: 17 residues within 4Å: Chain A: G.104, K.105, I.106, I.107, G.108, V.137, T.138, H.141, E.142, H.145, H.151, I.164, R.166, P.167, G.168, L.169 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.107, A:V.137, A:H.141, A:L.169 Hydrogen bonds: A:K.105, A:I.107, A:G.108, A:G.108, A:R.166, A:L.169 Water bridges: A:P.167 pi-Stacking: A:H.141, A:H.141 FLX.6: 17 residues within 4Å: Chain B: G.104, K.105, I.106, I.107, G.108, V.137, T.138, H.141, E.142, H.145, H.151, I.164, R.166, P.167, G.168, L.169 Ligands: ZN.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.107, B:V.137, B:H.141, B:L.169 Hydrogen bonds: B:K.105, B:I.107, B:G.108, B:G.108, B:R.166, B:L.169 Water bridges: B:P.167 pi-Stacking: B:H.141, B:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cirilli, M. et al., 2 angstrom X-ray structure of adamalysin II complexed with a peptide phosphonate inhibitor adopting a retro-binding mode. FEBS Lett. (1997)

Release Date

1998-11-11

Peptides

ADAMALYSIN II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADAMALYSIN II