SMTL ID : 4aiz.1

Crystallographic structure of 3mJL2 from the germinal line lambda 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-3-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.36, K.38, P.58, F.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.36, A:Q.36 Water bridges: A:K.38, A:K.38 Salt bridges: A:K.38 SO4.3: 4 residues within 4Å: Chain C: Q.36, K.38, P.58, F.61 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.36 Water bridges: C:K.38, C:K.38, C:G.56 Salt bridges: C:K.38

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 10 residues within 4Å: Chain A: V.97 Chain B: Q.36, K.38, V.44, V.46, I.57, P.58, F.61, E.80, D.81 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.58, B:F.61 Hydrogen bonds: B:Q.36, B:Q.36, B:D.81 Water bridges: B:Q.41 Salt bridges: B:K.38

1 x 88Q: 1,5:6,10-dianhydro-3,4,7,8-tetradeoxy-2,9-bis-C-(hydroxymethyl)-L-manno-decitol(Non-covalent)

88Q.4: 18 residues within 4Å: Chain A: Q.37, P.43, Y.86 Chain B: Q.37, K.38, P.39, G.40, Q.41, P.43 Chain C: Q.37, P.43, Y.86 Chain D: Q.37, K.38, P.39, G.40, Q.41, P.43 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:Q.37, B:Q.37, B:G.40, D:Q.37, D:G.40, D:Q.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Villalba, M.I. et al., Site-Directed Mutagenesis Reveals Regions Implicated in the Stability and Fiber Formation of Human Lambda3R Light Chains. J.Biol.Chem. (2015)

Release Date

2013-03-06

Peptides

V2-17 PROTEIN: ACD
V2-17 PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

D
D

B
B

V2-17 PROTEIN

V2-17 PROTEIN