SMTL ID : 4ak1.1

Structure of BT4661, a SusE-like surface located polysaccharide binding protein from the Bacteroides thetaiotaomicron heparin utilisation locus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

12 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: Y.339, T.415 Ligands: NA.11 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:Y.339, A:Y.339 Water bridges: F:T.415 NA.2: 3 residues within 4Å: Chain A: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.495 NA.3: 3 residues within 4Å: Chain B: Y.339, T.415 Ligands: NA.7 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Water bridges: D:T.415 Hydrogen bonds: B:Y.339, B:T.415 NA.4: 3 residues within 4Å: Chain B: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.473 NA.5: 3 residues within 4Å: Chain C: Y.339, T.415 Ligands: NA.9 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:Y.339, C:T.415 Water bridges: E:T.415 NA.6: 3 residues within 4Å: Chain C: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.477 NA.7: 3 residues within 4Å: Chain D: Y.339, T.415 Ligands: NA.3 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Y.339, D:T.415 Water bridges: B:T.415 NA.8: 3 residues within 4Å: Chain D: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:L.475 NA.9: 3 residues within 4Å: Chain E: Y.339, T.415 Ligands: NA.5 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain E Water bridges: C:T.415 Hydrogen bonds: E:Y.339, E:T.415 NA.10: 3 residues within 4Å: Chain E: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:L.475 NA.11: 3 residues within 4Å: Chain F: Y.339, T.415 Ligands: NA.1 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:Y.339, F:Y.339 Water bridges: A:T.415 NA.12: 3 residues within 4Å: Chain F: S.473, L.475, S.495 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:L.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cartmell, A. et al., How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2013-03-06

Peptides

BT_4661: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

BT_4661