SMTL ID : 4ak8.1

Structure of F241L mutant of langerin carbohydrate recognition domain.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-octamer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.112, A:E.120, A:D.135, A:D.135, H2O.7 CA.3: 5 residues within 4Å: Chain B: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.120, B:D.135, B:D.135, H2O.14, H2O.15 CA.5: 5 residues within 4Å: Chain C: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.112, C:E.120, C:D.135, C:D.135, H2O.23 CA.8: 5 residues within 4Å: Chain D: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.120, D:D.135, D:D.135, H2O.29, H2O.30 CA.10: 5 residues within 4Å: Chain E: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.112, E:E.120, E:D.135, E:D.135, H2O.38 CA.12: 5 residues within 4Å: Chain F: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.120, F:D.135, F:D.135, H2O.45, H2O.46 CA.14: 5 residues within 4Å: Chain G: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.112, G:E.120, G:D.135, G:D.135, H2O.54 CA.17: 5 residues within 4Å: Chain H: E.112, N.114, E.120, N.134, D.135 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.120, H:D.135, H:D.135, H2O.60, H2O.61

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.35 MG.4: 4 residues within 4Å: Chain B: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:Y.35 MG.6: 4 residues within 4Å: Chain C: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:Y.35 MG.9: 4 residues within 4Å: Chain D: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:Y.35 MG.11: 4 residues within 4Å: Chain E: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:Y.35 MG.13: 4 residues within 4Å: Chain F: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:Y.35 MG.15: 4 residues within 4Å: Chain G: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:Y.35 MG.18: 4 residues within 4Å: Chain H: Y.35, S.37, L.38, I.39 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:Y.35

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain D: S.62, E.63, R.106 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain H: S.62, E.63, R.106 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chabrol, E. et al., Alteration of the Langerin Oligomerization State Affects Birbeck Granule Formation. Biophys.J. (2015)

Release Date

2013-04-03

Peptides

C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER K: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER K