SMTL ID : 4akh.2 (1 other biounit)

Dynein Motor Domain - AMPPNP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: F.903, S.904, K.931, G.933, C.934, G.935, K.936, T.937, A.938, D.1011, E.1051, V.1075, C.1076, S.1080, K.1081, H.1084, R.1363, E.1367, R.1405, R.1408 Ligands: MG.5 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.904, A:S.904, A:K.931, A:G.933, A:C.934, A:G.935, A:K.936, A:T.937, A:T.937, A:A.938, A:H.1084 Salt bridges: A:K.936, A:K.936, A:R.1363, A:R.1405, A:R.1408, A:R.1408, A:R.1408 pi-Stacking: A:F.903 pi-Cation interactions: A:K.1081

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain A: V.1247, I.1248, T.1250, T.1253, G.1277, S.1278, G.1279, K.1280, T.1281, M.1282, D.1343, A.1390, I.1426, Y.1427, Y.1430, P.1475, R.1476, T.1479 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:I.1248, A:I.1248, A:T.1250, A:T.1253, A:G.1277, A:G.1279, A:G.1279, A:K.1280, A:K.1280, A:K.1280, A:T.1281, A:T.1281, A:T.1281, A:M.1282, A:D.1343, A:D.1343, A:Y.1427, A:T.1479 Salt bridges: A:R.1476

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: S.1618, R.1619, T.1620, G.1621, K.1622, T.1623, R.2115 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.1619, A:G.1621, A:K.1622, A:T.1623 Salt bridges: A:K.1622, A:R.2115 SO4.4: 6 residues within 4Å: Chain A: A.654, G.655, T.656, G.657, K.658, T.659 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.655, A:T.656, A:T.656, A:T.656, A:G.657, A:K.658, A:T.659 Salt bridges: A:K.658

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: T.937, E.1051, E.1367 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.937, A:E.1367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, H. et al., Insights Into Dynein Motor Domain Function from a 3.3 Angstrom Crystal Structure. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-03-14

Peptides

GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC

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