SMTL ID : 4ala.1

Structure of Dengue virus DIII in complex with Fab 2H12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-oligomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain B: Q.39, K.43, G.44, L.45 Chain C: D.85, F.87, G.99, G.100 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:Q.39, B:L.45, C:D.85, C:G.99 Water bridges: B:K.43, C:D.85 GOL.2: 8 residues within 4Å: Chain A: K.16, L.27, K.29, N.72 Chain B: V.58, N.59, Y.60, K.65 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.59, B:Y.60, B:K.65, B:K.65, B:K.65, A:K.29, A:N.72 Water bridges: A:K.16 GOL.3: 4 residues within 4Å: Chain C: R.108, N.138, D.170, T.172 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.108, C:R.108, C:N.138, C:D.170, C:D.170 GOL.4: 6 residues within 4Å: Chain A: I.58, T.59, A.60 Chain C: I.2, Q.27, T.93 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.93, C:T.93, A:A.60 Water bridges: C:D.1, C:D.1, C:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Midgley, C.M. et al., Structural Analysis of a Dengue Cross-Reactive Antibody Complexed with Envelope Domain III Reveals the Molecular Basis of Cross-Reactivity. J.Immunol. (2012)

Release Date

2012-06-06

Peptides

ENVELOPE PROTEIN: A
FAB 2H12 HEAVY CHAIN: B
FAB 2H12 LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

ENVELOPE PROTEIN

FAB 2H12 HEAVY CHAIN

FAB 2H12 LIGHT CHAIN

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