SMTL ID : 4alf.1 (1 other biounit)

Pseudomonas fluorescens PhoX in complex with phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 14 residues within 4Å: Chain A: E.90, E.194, N.195, D.292, R.385, E.387, D.479, D.494, E.532 Ligands: CA.2, CA.3, CA.4, FEO.5, EDO.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.195, A:R.385 Water bridges: A:D.494, A:E.532

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: E.273, E.387, W.388, D.479 Ligands: PO4.1, CA.3, FEO.5 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:E.273, A:D.479, FEO.5, H2O.6, H2O.6 CA.3: 8 residues within 4Å: Chain A: R.385, E.387, T.403, D.479, D.494 Ligands: PO4.1, CA.2, CA.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.387, A:D.479, A:D.494, H2O.22, H2O.22 CA.4: 6 residues within 4Å: Chain A: D.494, E.532, H.551 Ligands: PO4.1, CA.3, EDO.7 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.494, A:E.532, H2O.8, H2O.8, H2O.26

1 x FEO: MU-OXO-DIIRON(Non-covalent)

FEO.5: 11 residues within 4Å: Chain A: D.69, E.90, C.179, E.194, E.273, D.292, R.385, E.387 Ligands: PO4.1, CA.2, EDO.7 8 PLIP interactions: 7 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.90, A:C.179, A:E.194, A:E.194, A:E.273, A:D.292, A:E.387, H2O.6

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: V.390, V.391, L.481, G.482, F.483 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.181 EDO.7: 8 residues within 4Å: Chain A: E.90, Y.91, Q.177, E.194, N.195 Ligands: PO4.1, CA.4, FEO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.177, A:E.194, A:N.195 Water bridges: A:N.195 EDO.8: 12 residues within 4Å: Chain A: W.38, D.66, N.93, Y.96, H.551, P.552, G.553, E.554, K.568, P.569, R.570, S.571 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.93, A:P.552 Water bridges: A:S.571 EDO.9: 9 residues within 4Å: Chain A: T.188, E.251, I.252, D.253, S.259, T.260, P.261, V.262, R.264 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.251, A:S.259, A:R.264 Water bridges: A:R.150, A:D.253, A:T.260 EDO.11: 3 residues within 4Å: Chain A: S.456, P.471 Ligands: EDO.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.456 EDO.12: 7 residues within 4Å: Chain A: D.337, H.338, S.467, N.468, T.518, G.519, E.520 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.468 Water bridges: A:T.518, A:G.519 EDO.13: 8 residues within 4Å: Chain A: S.497, S.498, N.508, N.509, P.528, I.529, G.530 Ligands: CL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.497, A:G.530 Water bridges: A:S.497, A:C.531 EDO.14: 6 residues within 4Å: Chain A: T.323, Y.325, E.347, T.349, K.352, K.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.325, A:K.442 EDO.15: 5 residues within 4Å: Chain A: S.456, P.471, M.474, G.505 Ligands: EDO.11 No protein-ligand interaction detected (PLIP) EDO.16: 6 residues within 4Å: Chain A: P.154, G.322, T.323, T.349, Q.364, L.368 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.364 Water bridges: A:G.322

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 8 residues within 4Å: Chain A: I.529, G.530, G.553, E.554, N.555, G.556, G.557 Ligands: EDO.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yong, S.C. et al., A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry. Science (2014)

Release Date

2013-03-13

Peptides

ALKALINE PHOSPHATASE PHOX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALKALINE PHOSPHATASE PHOX

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