SMTL ID : 4all.1

Crystal structure of S. aureus FabI in complex with NADP and triclosan (P212121)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x TCL: TRICLOSAN(Non-covalent)

TCL.1: 11 residues within 4Å: Chain A: A.116, F.117, A.118, L.123, Y.168, Y.178, M.181, S.218, A.219, F.225 Ligands: NAP.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.168, A:Y.178 Hydrogen bonds: A:Y.178 Halogen bonds: A:A.118 TCL.4: 12 residues within 4Å: Chain B: A.116, A.118, L.123, Y.168, Y.178, M.181, P.213, S.218, A.219, V.222, F.225 Ligands: NAP.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.123, B:Y.168, B:Y.178 Hydrogen bonds: B:Y.178, B:Y.178 pi-Stacking: B:Y.168 Halogen bonds: B:A.118 TCL.6: 11 residues within 4Å: Chain C: A.116, F.117, A.118, L.123, Y.168, Y.178, M.181, S.218, A.219, V.222 Ligands: NAP.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:Y.178 Hydrogen bonds: C:Y.178 pi-Stacking: C:Y.168 Halogen bonds: C:A.118 TCL.7: 13 residues within 4Å: Chain D: A.116, F.117, A.118, M.120, L.123, Y.168, Y.178, M.181, K.185, S.218, A.219, V.222 Ligands: NAP.8 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.123, D:Y.168, D:Y.178, D:V.222 Hydrogen bonds: D:Y.178 pi-Stacking: D:Y.168 Halogen bonds: D:A.118

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 27 residues within 4Å: Chain A: G.34, I.35, A.36, S.40, I.41, R.61, K.62, S.65, I.86, D.87, V.88, S.114, I.115, A.116, I.141, T.166, T.167, Y.168, K.185, A.211, G.212, P.213, I.214, T.216, L.217, S.218 Ligands: TCL.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.41, A:Y.168, A:Y.168 Hydrogen bonds: A:G.34, A:A.36, A:I.41, A:R.61, A:R.61, A:K.62, A:S.65, A:D.87, A:V.88, A:I.115, A:K.185, A:I.214, A:I.214, A:L.217, A:S.218, A:S.218 Salt bridges: A:R.61, A:K.62 pi-Cation interactions: A:R.61 NAP.3: 29 residues within 4Å: Chain B: G.34, I.35, A.36, S.40, I.41, R.61, K.62, S.65, I.86, D.87, V.88, S.114, I.115, A.116, F.117, I.141, T.166, T.167, Y.168, K.185, A.211, G.212, P.213, I.214, T.216, L.217, S.218, F.225 Ligands: TCL.4 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.41, B:Y.168, B:A.211 Hydrogen bonds: B:G.34, B:I.41, B:R.61, B:R.61, B:S.65, B:D.87, B:V.88, B:Q.89, B:I.115, B:A.116, B:K.185, B:I.214, B:I.214, B:S.218 Water bridges: B:L.217 Salt bridges: B:R.61, B:K.62 pi-Cation interactions: B:R.61 NAP.5: 28 residues within 4Å: Chain C: G.34, I.35, A.36, S.40, I.41, R.61, K.62, S.65, I.86, D.87, V.88, S.114, I.115, A.116, I.141, T.166, T.167, Y.168, K.185, A.211, G.212, P.213, I.214, T.216, L.217, S.218, F.225 Ligands: TCL.6 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:Y.168, C:Y.168 Hydrogen bonds: C:G.34, C:I.41, C:R.61, C:S.65, C:D.87, C:V.88, C:I.115, C:A.116, C:K.185, C:I.214, C:I.214, C:T.216, C:S.218 Salt bridges: C:R.61, C:K.62 NAP.8: 27 residues within 4Å: Chain D: G.34, I.35, A.36, S.40, I.41, R.61, K.62, I.86, D.87, V.88, S.114, I.115, A.116, F.117, I.141, T.166, T.167, Y.168, K.185, A.211, G.212, P.213, I.214, T.216, L.217, S.218 Ligands: TCL.7 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.41, D:Y.168 Hydrogen bonds: D:G.34, D:I.41, D:R.61, D:K.62, D:S.65, D:D.87, D:V.88, D:S.114, D:I.115, D:K.185, D:I.214, D:I.214, D:S.218 Salt bridges: D:R.61, D:K.62 pi-Cation interactions: D:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiebel, J. et al., Staphylococcus Aureus Fabi: Inhibition, Substrate Recognition and Potential Implications for in Vivo Essentiality. Structure (2012)

Release Date

2012-05-09

Peptides

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]