SMTL ID : 4alz.1

The Yersinia T3SS basal body component YscD reveals a different structural periplasmatic domain organization to known homologue PrgH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: D.42, N.43, S.66, E.68, E.69, Q.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.43, A:S.66, A:Q.72 Water bridges: A:D.42, A:H.44

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Q.167, V.168, N.197, V.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.168, A:V.168, A:N.197, A:V.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudryashev, M. et al., In Situ Structural Analysis of the Yersinia Enterocolitica Injectisome. Elife (2013)

Release Date

2013-04-24

Peptides

YOP PROTEINS TRANSLOCATION PROTEIN D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YOP PROTEINS TRANSLOCATION PROTEIN D