SMTL ID : 4am2.1

Bacterioferritin from Blastochloris viridis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-24-mer

Ligands

12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 14 residues within 4Å: Chain A: L.19, V.22, W.26, R.45, I.49, M.52 Chain B: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 8 interactions with chain B, 7 interactions with chain A, Hydrophobic interactions: B:L.19, B:W.26, B:W.26, B:W.26, B:I.49, B:M.52, B:A.55, A:L.19, A:V.22, A:W.26, A:W.26, A:I.49, A:M.52 Salt bridges: B:R.45, A:R.45 HEM.6: 14 residues within 4Å: Chain C: L.19, V.22, W.26, R.45, I.49, M.52 Chain D: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain C, 8 interactions with chain D, Hydrophobic interactions: C:L.19, C:V.22, C:W.26, C:W.26, C:I.49, C:M.52, D:L.19, D:W.26, D:W.26, D:W.26, D:I.49, D:M.52, D:A.55 Salt bridges: C:R.45, D:R.45 HEM.11: 14 residues within 4Å: Chain E: L.19, V.22, W.26, R.45, I.49, M.52 Chain F: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 8 interactions with chain F, 7 interactions with chain E, Hydrophobic interactions: F:L.19, F:W.26, F:W.26, F:W.26, F:I.49, F:M.52, F:A.55, E:L.19, E:V.22, E:W.26, E:W.26, E:I.49, E:M.52 Salt bridges: F:R.45, E:R.45 HEM.16: 14 residues within 4Å: Chain G: L.19, V.22, W.26, R.45, I.49, M.52 Chain H: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain G, 8 interactions with chain H, Hydrophobic interactions: G:L.19, G:V.22, G:W.26, G:W.26, G:I.49, G:M.52, H:L.19, H:W.26, H:W.26, H:W.26, H:I.49, H:M.52, H:A.55 Salt bridges: G:R.45, H:R.45 HEM.21: 14 residues within 4Å: Chain I: L.19, V.22, W.26, R.45, I.49, M.52 Chain J: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain I, 8 interactions with chain J, Hydrophobic interactions: I:L.19, I:V.22, I:W.26, I:W.26, I:I.49, I:M.52, J:L.19, J:W.26, J:W.26, J:W.26, J:I.49, J:M.52, J:A.55 Salt bridges: I:R.45, J:R.45 HEM.26: 14 residues within 4Å: Chain K: L.19, V.22, W.26, R.45, I.49, M.52 Chain L: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 8 interactions with chain L, 7 interactions with chain K, Hydrophobic interactions: L:L.19, L:W.26, L:W.26, L:W.26, L:I.49, L:M.52, L:A.55, K:L.19, K:V.22, K:W.26, K:W.26, K:I.49, K:M.52 Salt bridges: L:R.45, K:R.45 HEM.31: 14 residues within 4Å: Chain M: L.19, V.22, W.26, R.45, I.49, M.52 Chain N: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain M, 8 interactions with chain N, Hydrophobic interactions: M:L.19, M:V.22, M:W.26, M:W.26, M:I.49, M:M.52, N:L.19, N:W.26, N:W.26, N:W.26, N:I.49, N:M.52, N:A.55 Salt bridges: M:R.45, N:R.45 HEM.36: 14 residues within 4Å: Chain O: L.19, V.22, W.26, R.45, I.49, M.52 Chain P: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain O, 8 interactions with chain P, Hydrophobic interactions: O:L.19, O:V.22, O:W.26, O:W.26, O:I.49, O:M.52, P:L.19, P:W.26, P:W.26, P:W.26, P:I.49, P:M.52, P:A.55 Salt bridges: O:R.45, P:R.45 HEM.41: 14 residues within 4Å: Chain Q: L.19, V.22, W.26, R.45, I.49, M.52 Chain R: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain Q, 8 interactions with chain R, Hydrophobic interactions: Q:L.19, Q:V.22, Q:W.26, Q:W.26, Q:I.49, Q:M.52, R:L.19, R:W.26, R:W.26, R:W.26, R:I.49, R:M.52, R:A.55 Salt bridges: Q:R.45, R:R.45 HEM.46: 14 residues within 4Å: Chain S: L.19, V.22, W.26, R.45, I.49, M.52 Chain T: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 8 interactions with chain T, 7 interactions with chain S, Hydrophobic interactions: T:L.19, T:W.26, T:W.26, T:W.26, T:I.49, T:M.52, T:A.55, S:L.19, S:V.22, S:W.26, S:W.26, S:I.49, S:M.52 Salt bridges: T:R.45, S:R.45 HEM.51: 14 residues within 4Å: Chain U: L.19, V.22, W.26, R.45, I.49, M.52 Chain V: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain U, 8 interactions with chain V, Hydrophobic interactions: U:L.19, U:V.22, U:W.26, U:W.26, U:I.49, U:M.52, V:L.19, V:W.26, V:W.26, V:W.26, V:I.49, V:M.52, V:A.55 Salt bridges: U:R.45, V:R.45 HEM.56: 14 residues within 4Å: Chain W: L.19, V.22, W.26, R.45, I.49, M.52 Chain X: L.19, V.22, S.23, W.26, R.45, I.49, M.52, A.55 15 PLIP interactions: 7 interactions with chain W, 8 interactions with chain X, Hydrophobic interactions: W:L.19, W:V.22, W:W.26, W:W.26, W:I.49, W:M.52, X:L.19, X:W.26, X:W.26, X:W.26, X:I.49, X:M.52, X:A.55 Salt bridges: W:R.45, X:R.45

48 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 Ligands: FE.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127 FE.3: 5 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 Ligands: FE.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.51, A:E.94, A:E.94, A:E.127, A:H.130 FE.4: 5 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 Ligands: FE.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.18, B:E.18, B:E.51, B:H.54, B:E.127 FE.5: 5 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 Ligands: FE.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.51, B:E.94, B:E.94, B:E.127, B:H.130 FE.7: 5 residues within 4Å: Chain C: E.18, E.51, H.54, E.127 Ligands: FE.8 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.18, C:E.18, C:E.51, C:H.54, C:E.127 FE.8: 5 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 Ligands: FE.7 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.51, C:E.94, C:E.94, C:E.127, C:H.130 FE.9: 5 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 Ligands: FE.10 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127 FE.10: 5 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 Ligands: FE.9 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.51, D:E.94, D:E.94, D:E.127, D:H.130 FE.12: 5 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: FE.13 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:H.54, E:E.127 FE.13: 5 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: FE.12 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127, E:H.130 FE.14: 5 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 Ligands: FE.15 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127 FE.15: 5 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 Ligands: FE.14 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.51, F:E.94, F:E.94, F:E.127, F:H.130 FE.17: 5 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 Ligands: FE.18 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.18, G:E.18, G:E.51, G:H.54, G:E.127 FE.18: 5 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 Ligands: FE.17 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130 FE.19: 5 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 Ligands: FE.20 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 FE.20: 5 residues within 4Å: Chain H: E.51, E.94, E.127, H.130 Ligands: FE.19 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.51, H:E.94, H:E.94, H:E.127, H:H.130 FE.22: 5 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 Ligands: FE.23 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127 FE.23: 5 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 Ligands: FE.22 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127, I:H.130 FE.24: 5 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 Ligands: FE.25 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127 FE.25: 5 residues within 4Å: Chain J: E.51, E.94, E.127, H.130 Ligands: FE.24 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.51, J:E.94, J:E.94, J:E.127, J:H.130 FE.27: 5 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 Ligands: FE.28 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.18, K:E.18, K:E.51, K:H.54, K:E.127 FE.28: 5 residues within 4Å: Chain K: E.51, E.94, E.127, H.130 Ligands: FE.27 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.51, K:E.94, K:E.94, K:E.127, K:H.130 FE.29: 5 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 Ligands: FE.30 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127 FE.30: 5 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 Ligands: FE.29 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.51, L:E.94, L:E.94, L:E.127, L:H.130 FE.32: 5 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 Ligands: FE.33 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127 FE.33: 5 residues within 4Å: Chain M: E.51, E.94, E.127, H.130 Ligands: FE.32 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, M:H.130 FE.34: 5 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 Ligands: FE.35 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.18, N:E.18, N:E.51, N:H.54, N:E.127 FE.35: 5 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 Ligands: FE.34 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.51, N:E.94, N:E.94, N:E.127, N:H.130 FE.37: 5 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 Ligands: FE.38 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.18, O:E.18, O:E.51, O:H.54, O:E.127 FE.38: 5 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 Ligands: FE.37 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.51, O:E.94, O:E.94, O:E.127, O:H.130 FE.39: 5 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 Ligands: FE.40 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.18, P:E.18, P:E.51, P:H.54, P:E.127 FE.40: 5 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 Ligands: FE.39 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.51, P:E.94, P:E.94, P:E.127, P:H.130 FE.42: 5 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: FE.43 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127 FE.43: 5 residues within 4Å: Chain Q: E.51, E.94, E.127, H.130 Ligands: FE.42 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.51, Q:E.94, Q:E.94, Q:E.127, Q:H.130 FE.44: 5 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 Ligands: FE.45 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127 FE.45: 5 residues within 4Å: Chain R: E.51, E.94, E.127, H.130 Ligands: FE.44 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127, R:H.130 FE.47: 5 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 Ligands: FE.48 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127 FE.48: 5 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 Ligands: FE.47 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130 FE.49: 5 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 Ligands: FE.50 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127 FE.50: 5 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 Ligands: FE.49 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, T:H.130 FE.52: 5 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 Ligands: FE.53 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.18, U:E.18, U:E.51, U:H.54, U:E.127 FE.53: 5 residues within 4Å: Chain U: E.51, E.94, E.127, H.130 Ligands: FE.52 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.51, U:E.94, U:E.94, U:E.127, U:H.130 FE.54: 5 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 Ligands: FE.55 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.18, V:E.51, V:H.54, V:E.127 FE.55: 5 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 Ligands: FE.54 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.51, V:E.94, V:E.94, V:E.127, V:H.130 FE.57: 5 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 Ligands: FE.58 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.18, W:E.18, W:E.51, W:H.54, W:E.127 FE.58: 5 residues within 4Å: Chain W: E.51, E.94, E.127, H.130 Ligands: FE.57 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.51, W:E.94, W:E.94, W:E.127, W:H.130 FE.59: 5 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 Ligands: FE.60 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127 FE.60: 5 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 Ligands: FE.59 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.51, X:E.94, X:E.94, X:E.127, X:H.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wahlgren, W.Y. et al., Structural Characterization of Bacterioferritin from Blastochloris Viridis. Plos One (2012)

Release Date

2012-10-31

Peptides

BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

M
A

N
B

O
A

P
B

Q
A

R
B

S
A

T
B

U
A

V
B

W
A

X
B

BACTERIOFERRITIN

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