SMTL ID : 4am9.1

CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION CHAPERONE SYCD IN COMPLEX WITH A PEPTIDE OF THE TRANSLOCATOR YOPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.65, H.76 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.65, A:H.76

5 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2: 5 residues within 4Å: Chain A: G.35, K.36, Y.37, E.38, D.39 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.35, A:K.36, A:Y.37, A:E.38, A:D.39 BU3.3: 6 residues within 4Å: Chain A: G.69, Q.70, Y.71, D.72, L.73, K.102 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.70 Hydrogen bonds: A:Y.71, A:D.72, A:L.73, A:K.102 BU3.4: 4 residues within 4Å: Chain A: E.104, L.105, A.106, E.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.105, A:A.106, A:E.107 BU3.5: 7 residues within 4Å: Chain A: Y.78, S.79, A.82, F.91, P.92, A.95, L.114 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.82, A:P.92, A:L.114 Hydrogen bonds: A:S.79, A:F.91 BU3.6: 3 residues within 4Å: Chain A: R.90 Chain B: I.7, K.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.6, B:K.8, A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schreiner, M. et al., Crystal Structure of the Yersinia Enterocolitica Type III Secretion Chaperone Sycd in Complex with a Peptide of the Minor Translocator Yopd. Bmc Struct.Biol. (2012)

Release Date

2012-05-30

Peptides

CHAPERONE SYCD: A
YOP EFFECTOR YOPD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CHAPERONE SYCD

YOP EFFECTOR YOPD

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