SMTL ID : 4amt.1

Crystal structure at 2.6A of human prorenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA-FUC.1: 5 residues within 4Å: Chain A: N.118, T.120, Q.137, M.150 Ligands: SO4.3 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.7: 5 residues within 4Å: Chain B: N.118, T.120, Q.137, M.150 Ligands: SO4.9 No protein-ligand interaction detected (PLIP)

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: N.232, H.234, K.318 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.234, A:K.318 SO4.3: 3 residues within 4Å: Chain A: K.116, Q.137 Ligands: NAG-NAG-BMA-FUC.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.137 Salt bridges: A:K.116 SO4.4: 5 residues within 4Å: Chain A: F.175, I.176, E.177, T.241, R.372 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.176, A:E.177 Salt bridges: A:R.372 SO4.5: 5 residues within 4Å: Chain A: N.57, D.60, A.272, S.273, Y.274 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.57, A:N.57, A:D.60, A:S.273, A:Y.274 SO4.6: 4 residues within 4Å: Chain A: G.70, T.71, I.139, T.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.70 Water bridges: A:G.70, A:T.141 SO4.8: 3 residues within 4Å: Chain B: N.232, H.234, K.318 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.234, B:K.318 SO4.9: 3 residues within 4Å: Chain B: K.116, Q.137 Ligands: NAG-NAG-BMA-FUC.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.137 Salt bridges: B:K.116 SO4.10: 5 residues within 4Å: Chain B: F.175, I.176, E.177, T.241, R.372 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.176, B:E.177 Salt bridges: B:R.372 SO4.11: 5 residues within 4Å: Chain B: N.57, D.60, A.272, S.273, Y.274 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.57, B:N.57, B:D.60, B:S.273, B:Y.274 SO4.12: 4 residues within 4Å: Chain B: G.70, T.71, I.139, T.141 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.70 Water bridges: B:G.70, B:T.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, A., The Crystal Structure of Prorenin. To be Published

Release Date

2013-03-20

Peptides

RENIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RENIN

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