SMTL ID : 4ap6.1 (3 other biounits)

Crystal structure of human POFUT2 E54A mutant in complex with GDP- fucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x GFB: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE(Non-covalent)

GFB.1: 17 residues within 4Å: Chain A: P.46, A.47, G.48, F.49, N.50, H.285, R.287, A.324, T.325, D.326, V.360, A.361, D.364, V.379, S.380, T.381, F.382 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:P.46, A:G.48, A:F.49, A:N.50, A:N.50, A:R.287, A:V.360, A:T.381, A:T.381, A:F.382 Salt bridges: A:R.287, A:R.287, A:R.287, A:D.364 pi-Stacking: A:F.382

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.202 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: F.49, R.52, R.81 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.I. et al., Structure of Human Pofut2: Insights Into Thrombospondin Type 1 Repeat Fold and O-Fucosylation. Embo J. (2012)

Release Date

2012-08-08

Peptides

GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2

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